G146573


Basic Information

Item Value
gene id G146573
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11441530 ~ 11443247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU173606
acagattttaaaaacagtttaaatgaGCAAATAACAAGTAGTATGGATTAAATACTGTAGGTATTACTGTGACAGcaatatatcatataatatattgaagcaaattaaaatatgtgtgtgtgaaatccagGACAAGAAAGTAAACAATCATATAAATGTGCATTAATAAGCTTTTTTTAGCCAATGATACTGGTTActttcacagtgaagcatgaaaATTATTATGAAGCATTCGCTCAATGTGTTGAAAGCCATTTACAATatagttcacacacacacagcaacggAACAGACATGTTTCATAGTAGGGATCTGACTGGACTGTACATTTACACATGCTTAGTAGAATTACAGGATTTTATTGGATTGATTATATGCAGTATATTGCCTGCAAATTATAGCAGGTGCTTTTTTTCTTGACTCCTATTTGCTCAGATCCAGAATAATGAAACGGCATCTGACCTCTCACTGCCTCCTGAATCTTTTCATCTTGTTTTGACAGAATATGGCCAGAATCATTTGCTCTGGTGAATCGTGAGTATTCTTGTCATTTCTTCTCAGCAACCTACCGGTTAAAGCTCAATAGTACCTGAGGAATGGATATGCAGCAGGCCTAAAAACTAAACAAGAGGTTAGATCAAACTGAAGCAGGCCCAGATGGCTGGCAGAACACAAAATGTTTCGAAACAAGACATCTTTTTGCACTTGATATGAATAGTTAGAAATTGAAATGAGGAGAGGTTGGAATTTGGAGGAATTAGTGTTTCAAAGGTGATGTAAACTGAACAGACTTCTGCTTAATGCTGGAAATGAGGATGTCAACACTGCTATTTCTGAACATGTCTGATTCTGATTTGTAATGCACCTCAGGAATGTCTATGTGTTGGCCTCAATTATATGACATTTAGGGAGTTTAAATACTAGCATAAAGTATAGCTTCAGAGAACTAATAATTGCAATTAAGCCCTACATTTTGGCATATAAAACACATGTGAATTGCAGTGAGGTCTATTTAAAGCAATTTAATTTGTACAAAGCTAACACTTAAAATTATACAGGGCAAGCTATGGACTGTGGGGGGTGGGAACAAAAGTAGAGTAATCTGACAGTAAAAACACTGTTACATTTATGTTTAgcaataaaaaattttatacaAGATACAGCTTCTAACCATGAAACATAACTATTCGTTAGTGCTGAGCAGAAATGCTGCACATCTGTAAAGCAAATGACAAAGTTACTGACTGTACGAACTTGGTCAAGGATGGGAGAACAAGGGGCTGAAAGCTGATTATAGATCAGTTTAGATTTAGTTTTAGATACTACagttaataataacatttaggCATTTTTGATTGTTCTTGCGTGACATACGAGTGTTTAAAGAATACCGAAACTAAAGTGATTTAGTCATTTTAGCTTAAATAAAAGCTGGGATATGGATCCTAATGTAGGAGTTCTTGCAATATCTAAAAGAAGTCTGCTATTGTAATGATAAGGTGGCCCTAACTGCTGAACCACTAATAAATGATTACGATCAGCACAACAGAATGATCAGGGCAAGGCAGAGATGCTAAACTTTGTTGTCCCTCATTCCTcagcttttttccttttccacatTGACAAGCCAATTCAGTAAAGCAGTGATTTGAGACTTTGAATAAGAAAGttgagaaataaatacaaatatcgTAACAGAACGCTTCAGAACacctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173606 True 1718 lncRNA 0.35 1 11441530 11443247

Neighbor

gene id symbol gene type direction distance location
zgc:152774 zgc:152774,LOC108274965,LOC107731348 coding upstream 119 11420317 ~ 11441411 (+)
pmt LOC108275150,LOC108438819,LOC107552346,LOC107662165,LOC107731361 coding upstream 28029 11394178 ~ 11413501 (+)
LOC113529554 tlx3 coding upstream 105773 11324357 ~ 11335757 (+)
LOC113529553 fam196b coding upstream 213642 11198866 ~ 11227888 (+)
LOC117597888 NA coding upstream 607006 10832104 ~ 10834524 (+)
cetn4 cetn1,LOC108438842,LOC103037928,LOC107596341 coding downstream 31174 11474421 ~ 11481777 (+)
il21 NA coding downstream 47164 11490411 ~ 11492927 (+)
arsia LOC108275202,LOC108443929,LOC103039297,LOC107678625,LOC107552342,LOC107731357 coding downstream 128843 11572090 ~ 11577055 (+)
rpl26 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding downstream 145794 11589041 ~ 11593788 (+)
LOC113529641 ncbp1 coding downstream 159200 11602447 ~ 11616644 (+)
G146576 NA non-coding upstream 24141 11417178 ~ 11417389 (+)
G146513 NA non-coding upstream 148047 11221581 ~ 11293483 (+)
G146380 NA non-coding upstream 388105 11053167 ~ 11053425 (+)
G146377 NA non-coding upstream 390110 11051216 ~ 11051420 (+)
G146308 NA non-coding upstream 424176 11016095 ~ 11017354 (+)
G146645 il17b non-coding downstream 75075 11518322 ~ 11579432 (+)
G146687 NA non-coding downstream 227515 11670762 ~ 11674491 (+)
G146741 NA non-coding downstream 284779 11728026 ~ 11728681 (+)
G146765 NA non-coding downstream 357830 11801077 ~ 11830797 (+)
G146791 NA non-coding downstream 482621 11925868 ~ 11929820 (+)
hrh2a LOC108274475 other upstream 135212 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 845929 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 893601 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2599264 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3974978 7447870 ~ 7466552 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 152252 11595499 ~ 11597970 (+)
G147542 NA other downstream 1473672 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 1906076 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 1929625 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 2318087 13761334 ~ 13776871 (+)

Expression


Co-expression Network