atp6v0e1 (va0e1,atp6v0e1,LOC106612155)


Basic Information

Item Value
gene id atp6v0e1
gene name va0e1,atp6v0e1,LOC106612155
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11595499 ~ 11597970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU173740
CCGTCAGTCATCGCTGTTGTGAAGTTTGTGGAAGTTAGTCAAATCCGCTTCAGCTTCTTGTTCTATTAAAATTACTGTCCTGTGTCTTtgtttgaaaagaaaacaatggcGGAAATGTCTTTAGTGATCTCAGTAAGCGTAATGACCGTGTTTTGGGGCATTGTTGGAGGACTGGTGCCGTGGTTTATTCCTAAAGGACCGAATCGGGGAGTTATTGTGGTCATGTTGGTGCTAACTGCAGTTTGCTGCTACCTCTTCTGGCTGATTGCTTTTCTGGCCCAGCTGAACCCGCTGCTTGGGCCGACGCTCAGCAATGACACAATATGGTACCTCTATTATCACTGGGGATAATTTATAATCATAGTCTCCTTGTCTGTCAGATGCAtgtatatggccaaaggttcaCTTCACTTTCTCACAAAGGGAAGAAGGAATCCATACGGTGCCTGTGTGTGTAGTAAGACTTGATGTATAGATTTGCTTGGTCGTCttttgaagaaaataatgaacaaactgaaaatgatgtgtactttgttttgtatttctgtGCATTGCCAAAACCATGTCCTTGTATTTGAAGTATTTACTCTGTGTCTCTGTTAATGCATTTCCTTGTCATTTTGTATTAATGTAACTAAAAACGTGGAATAAAGATCTCTAGACAA
>XM_026918972.2
CTCCTGTAGTCACGTGACCGTCAGTCATCGCTGTTGTGAAGTTTGTGGAAGTTAGTCAAATCCGCTTCAGCTTCTTGTTCTATTAAAATTACTGTCCTGTGTCTTtgtttgaaaagaaaacaatggcGGAAATGTCTTTAGTGATCTCAGTAAGCGTAATGACCGTGTTTTGGGGCATTGTTGGAGGACTGGTGCCGTGGTTTATTCCTAAAGGACCGAATCGGGGAGTTATTGTGGTCATGTTGGTGCTAACTGCAGTTTGCTGCTACCTCTTCTGGCTGATTGCTTTTCTGGCCCAGCTGAACCCGCTGCTTGGGCCGACGCTCAGCAATGACACAATATGGTACCTCTATTATCACTGGGGATAATTTATAATCATAGTCTCCTTGTCTGTCAGATGCAtgtatatggccaaaggttcaCTTCACTTTCTCACAAAGGGAAGAAGGAATCCATACGGTGCCTGTGTGTGTAGTAAGACTTGATGTATAGATTTGCTTGGTCGTCttttgaagaaaataatgaacaaactgaaaatgatgtgtactttgttttgtatttctgtGCATTGCCAAAACCATGTCCTTGTATTTGAAGTATTTACTCTGTGTCTCTGTTAATGCATTTCCTTGTCATTTTGTATTAATGTAACTAAAAACGTGGAATAAAGATCTCTAGACAATGTaa

Function

symbol description
atp6v0e1 Predicted to enable hydrolase activity and proton transmembrane transporter activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye and optokinetic behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Used to study blindness. Orthologous to human ATP6V0E1 (ATPase H+ transporting V0 subunit e1).

NR:

description
PREDICTED: V-type proton ATPase subunit e 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e

RNA

RNA id representative length rna type GC content exon number start site end site
TU173740 False 665 lncRNA 0.41 4 11595516 11597965
XM_026918972.2 True 687 mRNA 0.41 4 11595499 11597970

Neighbor

gene id symbol gene type direction distance location
rpl26 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding upstream 1711 11589041 ~ 11593788 (+)
arsia LOC108275202,LOC108443929,LOC103039297,LOC107678625,LOC107552342,LOC107731357 coding upstream 18444 11572090 ~ 11577055 (+)
il21 NA coding upstream 102572 11490411 ~ 11492927 (+)
cetn4 cetn1,LOC108438842,LOC103037928,LOC107596341 coding upstream 113722 11474421 ~ 11481777 (+)
zgc:152774 zgc:152774,LOC108274965,LOC107731348 coding upstream 154088 11420317 ~ 11441411 (+)
LOC113529641 ncbp1 coding downstream 4477 11602447 ~ 11616644 (+)
LOC113529539 pcgf3,LOC107697629,LOC107751329,LOC107562381,LOC107587068 coding downstream 33652 11631622 ~ 11669599 (+)
smu1a smu1,LOC108275199,LOC106604632,LOC103353869,LOC108442464 coding downstream 274926 11872896 ~ 11880458 (+)
tbc1d2 tbc1d2 coding downstream 305723 11903693 ~ 11924459 (+)
abca1b LOC108275029,LOC108442474,LOC107680923,LOC107660187,LOC107587072 coding downstream 366167 11964137 ~ 11997179 (+)
G146645 il17b non-coding upstream 16067 11518322 ~ 11579432 (+)
G146573 NA non-coding upstream 152252 11441530 ~ 11443247 (+)
G146576 NA non-coding upstream 178110 11417178 ~ 11417389 (+)
G146513 NA non-coding upstream 302016 11221581 ~ 11293483 (+)
G146380 NA non-coding upstream 542074 11053167 ~ 11053425 (+)
G146687 NA non-coding downstream 72792 11670762 ~ 11674491 (+)
G146741 NA non-coding downstream 130056 11728026 ~ 11728681 (+)
G146765 NA non-coding downstream 203107 11801077 ~ 11830797 (+)
G146791 NA non-coding downstream 327898 11925868 ~ 11929820 (+)
G146877 NA non-coding downstream 462325 12060295 ~ 12060586 (+)
hrh2a LOC108274475 other upstream 289181 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 999898 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 1047570 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2753233 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 4128947 7447870 ~ 7466552 (+)
G147542 NA other downstream 1318949 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 1751353 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 1774902 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 2163364 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 2193003 13790973 ~ 13829331 (+)

Expression


Co-expression Network