G146741


Basic Information

Item Value
gene id G146741
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11728026 ~ 11728681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU173827
gtaccgttctcctggcaacctccaaacccagactcgtccatcagattgccagatggaaaagcgtgattcatcactccagagaacgcgtctccactgctctagagtccagtggcggcgtgctttacaccactgcatctgacgctttgcattgcacttggtgatgtgtggcttggatgcagctgctcggccatggaaacccattccatgaagctctctgcgtactgtacttgggctaatctgaaggtcacatgaagtttggagctctgtagcaattgactgtgaagaaagtcgacgacctctttgcactatgcgcttcagcatccgctgacccctctccgtcagtttacatggcctaccacttcgtggctgagttgctgttgttcccaaactcttccattttgttatgataaagctgacagttgactgtggaatatttaggagcgaggaaatttcacgactggatttgttgcacaggtggcatcctatgacagttccacgctggaattcactgagctcctgagagcggcccattctttcacaaatgtttgtaaaaacagtctgcatgcctaagtgcttgattttatacacctgtggccaggccaagtgattaggacacctgattctgatcatttggatgggtgactgaatacttttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173827 True 656 lncRNA 0.49 1 11728026 11728681

Neighbor

gene id symbol gene type direction distance location
LOC113529539 pcgf3,LOC107697629,LOC107751329,LOC107562381,LOC107587068 coding upstream 58427 11631622 ~ 11669599 (+)
LOC113529641 ncbp1 coding upstream 111382 11602447 ~ 11616644 (+)
rpl26 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding upstream 134238 11589041 ~ 11593788 (+)
arsia LOC108275202,LOC108443929,LOC103039297,LOC107678625,LOC107552342,LOC107731357 coding upstream 150971 11572090 ~ 11577055 (+)
il21 NA coding upstream 235099 11490411 ~ 11492927 (+)
smu1a smu1,LOC108275199,LOC106604632,LOC103353869,LOC108442464 coding downstream 144215 11872896 ~ 11880458 (+)
tbc1d2 tbc1d2 coding downstream 175012 11903693 ~ 11924459 (+)
abca1b LOC108275029,LOC108442474,LOC107680923,LOC107660187,LOC107587072 coding downstream 235456 11964137 ~ 11997179 (+)
thg1l thg1l,LOC103154062 coding downstream 277589 12006270 ~ 12011510 (+)
irf7 irf7 coding downstream 335736 12064417 ~ 12070764 (+)
G146687 NA non-coding upstream 53535 11670762 ~ 11674491 (+)
G146645 il17b non-coding upstream 148594 11518322 ~ 11579432 (+)
G146573 NA non-coding upstream 284779 11441530 ~ 11443247 (+)
G146576 NA non-coding upstream 310637 11417178 ~ 11417389 (+)
G146513 NA non-coding upstream 434543 11221581 ~ 11293483 (+)
G146765 NA non-coding downstream 72396 11801077 ~ 11830797 (+)
G146791 NA non-coding downstream 197187 11925868 ~ 11929820 (+)
G146877 NA non-coding downstream 331614 12060295 ~ 12060586 (+)
G146883 NA non-coding downstream 363499 12092180 ~ 12100566 (+)
G147436 NA non-coding downstream 961520 12690201 ~ 12690479 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 130056 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 421708 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 1132425 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 1180097 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2885760 8841476 ~ 8842266 (+)
G147542 NA other downstream 1188238 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 1620642 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 1644191 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 2032653 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 2062292 13790973 ~ 13829331 (+)

Expression


Co-expression Network