G147438


Basic Information

Item Value
gene id G147438
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12690927 ~ 12691422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU174636
cacatcatgtgtcaaacagggtggaggcagtgttatggcatgggcatgtatggctgccagtggaacgggctcactggtgtttattgctgatgtgactgctgacagaagtagcaagatgaattcttaggtgtatagggctatactctctgctcacattcagccaaatgctacaaaactgatatgatcccgcttcacagtgcaggtggataatgaccctaaacatactgcgaaagcaactcaagactttttgaaggcaaagaaatggaatattcttcaatggccaagtcagtcaccttatctcaacccaatagagcatgccttccacttactgaagacaatactgaaggcagaaagacccacaaacaagcagcaactgaaggtggctgcagtgaaggcctggcaaagcatctccagggaggaaactcagaatttgagttttgagaacatgggctccagacttcaggcagtcattgactgcaaaggattttcatccagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174636 True 496 lncRNA 0.46 1 12690927 12691422

Neighbor

gene id symbol gene type direction distance location
igf2b LOC100304637,LOC108439251 coding upstream 6106 12680740 ~ 12684821 (+)
th th,LOC108274586 coding upstream 16346 12666989 ~ 12674581 (+)
uevld uevld,LOC108275186 coding upstream 62430 12619213 ~ 12628497 (+)
spty2d1 spty2d1 coding upstream 73507 12612041 ~ 12617420 (+)
LOC113529869 igsf22 coding upstream 92082 12579360 ~ 12598845 (+)
si:ch211-236l14.4 LOC108274486,LOC108439252 coding downstream 89866 12781288 ~ 12806453 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding downstream 145589 12837011 ~ 12850393 (+)
phlda2 phlda2,phla2 coding downstream 171079 12862501 ~ 12863555 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding downstream 431721 13123143 ~ 13161929 (+)
mob2a mob2,LOC108274974,LOC108411394 coding downstream 479273 13170695 ~ 13215991 (+)
G147436 NA non-coding upstream 448 12690201 ~ 12690479 (+)
G146883 NA non-coding upstream 590361 12092180 ~ 12100566 (+)
G146877 NA non-coding upstream 630341 12060295 ~ 12060586 (+)
G146791 NA non-coding upstream 761107 11925868 ~ 11929820 (+)
G146765 NA non-coding upstream 860130 11801077 ~ 11830797 (+)
G147472 NA non-coding downstream 119100 12810522 ~ 12811329 (+)
G147479 NA non-coding downstream 140406 12831828 ~ 12832066 (+)
G147554 NA non-coding downstream 241459 12932881 ~ 12937704 (+)
G147560 ptprj,LOC108274725 non-coding downstream 247175 12938597 ~ 12995058 (+)
G147558 ptprj,LOC108274725 non-coding downstream 247984 12939406 ~ 12943061 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1092957 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 1384609 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 2095326 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 2142998 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 3848661 8841476 ~ 8842266 (+)
G147542 NA other downstream 225497 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 657901 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 681450 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 1069912 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 1099551 13790973 ~ 13829331 (+)

Expression


Co-expression Network