G147787 (LOC108274999)


Basic Information

Item Value
gene id G147787
gene name LOC108274999
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13390317 ~ 13390708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175091
TTATCCTCCACATGAGGCCTTGGCTCATCCTCTTGTCTCATGTTAACTCTGATTAATTCTTCCTTCCATTCTGGTGTCTCTCTGGCCCTAAGGCTACCTGTCTTATCTCCAAACAACATGCACTTCTCACTGCTCTTCCTCCCTGGCATGTAGTCCACCACTTCTTCCACTTCACCTTGTCCCTTATGCTGTAGATTTAGTACAGTGGAGCTAATCTCCTCTCTTCTGCTTCCTCCATTCATGGTTCTTTCCACCTCCAAGTCCTCCTCTCTAGGGTCATTTTCTTCTTGCCTGATCCGTCTGCCCCTCTCCAGCCTCTGAGTCCAGTCACTGAAACCTTCATCCTCTTCCAGTGTACCAGAGCCACTGGGTTTCAGTTCACTCTCAAAGct

Function

NR:

description
PREDICTED: non-muscle caldesmon-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175091 True 392 lncRNA 0.48 1 13390317 13390708

Neighbor

gene id symbol gene type direction distance location
myod1 myod1,LOC107758742 coding upstream 32163 13356233 ~ 13358154 (+)
mob2a mob2,LOC108274974,LOC108411394 coding upstream 174326 13170695 ~ 13215991 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding upstream 228388 13123143 ~ 13161929 (+)
phlda2 phlda2,phla2 coding upstream 526762 12862501 ~ 12863555 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding upstream 539924 12837011 ~ 12850393 (+)
pdcd2l pdcd2l coding downstream 74565 13465273 ~ 13470743 (+)
banp banp,LOC107742045 coding downstream 82476 13473184 ~ 13522795 (+)
LOC113529436 znf469 coding downstream 132914 13523622 ~ 13712474 (+)
LOC113529751 rassf8,LOC108428816 coding downstream 351252 13741960 ~ 13757527 (+)
trnar-ucg_5 NA coding downstream 429882 13820590 ~ 13820662 (+)
G147784 NA non-coding upstream 18541 13360035 ~ 13371776 (+)
LOC117597924 NA non-coding upstream 57273 13329642 ~ 13333044 (+)
G147641 NA non-coding upstream 202033 13187691 ~ 13188284 (+)
G147630 NA non-coding upstream 225527 13164576 ~ 13164790 (+)
G147602 NA non-coding upstream 299812 13070255 ~ 13090505 (+)
G147792 NA non-coding downstream 1390 13392098 ~ 13392749 (+)
G147814 NA non-coding downstream 8116 13398824 ~ 13399650 (+)
G147791 NA non-coding downstream 22784 13413492 ~ 13432584 (+)
G147785 tnni2a.3 non-coding downstream 23593 13414301 ~ 13436909 (+)
G147817 NA non-coding downstream 46406 13437114 ~ 13437381 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 1121 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 37055 13349323 ~ 13353262 (+)
G147542 NA other upstream 473063 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1792347 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2083999 11295128 ~ 11306318 (+)
ces2b LOC108275184 other downstream 370626 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 400265 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 2172598 15563306 ~ 15652684 (+)
svip svip other downstream 2330570 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 2417282 15807990 ~ 15822591 (+)

Expression


Co-expression Network