G147788 (LOC108274466,LOC108428825,LOC107549278,LOC107595234,LOC107758757,LOC107675297,LOC107742063,LOC107675461)


Basic Information

Item Value
gene id G147788
gene name LOC108274466,LOC108428825,LOC107549278,LOC107595234,LOC107758757,LOC107675297,LOC107742063,LOC107675461
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13443129 ~ 13446391 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175092
CTTATagttgttttataataatatcatgagaaatattagatacagtTGCCTatactgaagatttttttttttgctttttacttttacttctgCATTTTGCAGTTAATTTACTTTTATGTGTTGATCGAGCTTGTTACGGAAATACACTTCAAATCATTGTCTTGAGTCGAAAATGAattgattgttttctttaatatctACGTATACAAATGCATAAGActttaaaaacatgatacagaAAATACATTGCCACATTGTTCTGTTTTCTAGTTTAAACAAAGAACATTATAATTTAGGTCAATAAAGTTCACCTGAGATCAAGTCAAACTGTTAGAAATATACAGCAAAAGAAAGCACTGTAGTTAGGCTATATATAGATTAGACTGTGGATAATGTTTTTAGGAGAGGAGCATAGCAGTTGGGAGAATTTACGATCAGTCAGACAGAGATGCACTAGTTACCACCACAAGGGTTGAAAATACTGCCACTGCTCACAGAATGACCACTGCAACAAAAACTTCACATTACTGAACTGAGCTGAACTGAACAATGCAGTACTCGCAGCAGGACAAGGATTAGCCATTATACAGAATATTCCAGAGTATAAAAACATTGTCAGTGCCTGACAACTGCATACATAGTGTGAGTCTTACAATACAATCACACAGGACGAGTTCAAAGGCACCAAAACTCAGGAACGTACCACCTCAGCACACGGCtcactaaaatattaaaatataataattactgTACACAAGCATAAGCAATACCACACAAGAGGTTGGTTAGAACTTCCTACATGGtgaatgaaaacacaacagtaatCTAGCATCAATTAATAATCAGTACACAGGAAGCATGTGCATTATATTCATCTAAAAATAGTAAAGGTCTATCTGTGCTGAGCAATGAGGAACCAAAAGAAGTGGCATGTctgttaatgaacatttcacCTGTGCAGTTTCTTTACAACGTCTAGTtagtgcaataaaaaaaagtgtttgcagTAGTTCACTGCTTCACAATTCAGTCAAACCCATACTACCAATGCTGACAACCCAAAGATACACACTAGTTGGTACTCGTCTCACTACAgacaaaatatatttcacttcCCAAGCACCAACGCTCCAGTTGAGTGCAACAGTTTGCATCTTGCATtgtttttgaatgaaaaaaaggtaaatgtaCCACTCTTTCACAATGTAtctacatgcaaaaaaaaaaataaaaatacatgggTTTGATAAGAACCAAAAAGAAGACCCTCTCAGTCTCAGGGTTTGATTTGAAGTATGCATTGTATTATATCTGATAGCATTCTAGCagagatgttttaaaaaaaacaatggggCAAGCAATATGGCAGGTAGGGAGCAGCAGGAAGGCGATCCAAAATCTGCTCGAAGATTATGTCATATATGTGAAgaagttattagagaatatttcaCTTTCTGAAATTTAGAACTACTATTTagattttttcattattaatatcttaaaatgTACTATTTTGTTACTAGTGATAATGCAGGAAAAACTGCAGAAATGTCTGGGtaaacatttctctcttttctttgtgCTAAGGGTATGCAAGCTTTTGCATTCAACCTTGAAAAGCTGGTGATAATCATGTGACTGGGAAAATGTTGTGACCAAATTCCTCATGGAGGAAAATTCTTCCCTACAAAACATTAAGAATGTCCGTTGTCTCTGAAAAGTGCATGGATTACCAAAATGGTTCAGATCcaatgcagatttatttttataatggcAGCAGTTAAAGACTTGAAGCTAGATCAGTGTCTCCCAACCCTCTCAGACTGTCCAcgtttttcctctctttcaacACAGCTGTGCCAGGTATTGAGTGCTCTGCCTGGTTTTGCGCTTGTTGCTAGCTAAGAGAGAGCCTAAATTTGGACAGTCTGGAGGCTCCTAAGGATTGAGTTGGGAAACACGGCACTAGACTGATGCTTAACCACTATTCAAAGGTAGTCCATATGGAGAAGCTTTACACTCCCCATCCAGTAGACATGATTTGACATCACTGGGTCTCCTGAGATTTCCCATCACGctgccctgaaaaaaaaatgtaacaacaCTATGGCTGCAACTCTCATATTCACAAGACTTCAGCACCAGAGTCTTTTAACACCAGAGCAGACACATTTTCACTCCGGCTCTCTTGTTTAGCAGCTATACTGTACTTGATCTGGAGTTTTTTCCATCTCAGATTTAGTCTggaagaagtttttttttttttttttgaatgaagcTTTTTGAATAGCTAGTGGCTAATCACTAGGGTTAGTAATTAGCTCCAAGCTGCCAGTCCTAGAAGtgtaaatcagtaaatcagtaTAAATCAGTATGAGGCTGAAAAGAAATGCATGGTGGTATGTTTAGGTCCAAGCTAGCTTGCGTGAGATGGCCTGTTTGAAGCACTCAGGGTCAGTGTTTCCACCAGGTCGAAGTGTCCTCTCCAGACTCACTAATGCATTCTGGTGGCACTCGCGGATGTTGACCGGATGCTTGGCCCTGAGCAGTTCATACGCAGCGATCAGTCTCATGTTGTGCTTGATCATGAGGTACTGGATGACACATGTAGGGGCGAGTGAGAAGCCATCGCGGCAGTGAACCAGCACTCGTTTCCTCTTTCCTGCTGAGGCATCGATGCACTCATTGATGGCATCAAAGCAACGCTGGTGCAGCTCTGCTCCATCCTCACCCAGCTCGCTCGACTCCTCCATGTGCACCTTCAGGCGTGACCAGCTGTGCTTGGTGCCTCTCGAGCATGTGCAAGGGATCAAGTTGAGGCATGTCTCGCCTGGCAGGCTGCTCATGTCGATTATGCTGTCGATGTTGTTCCGGCACAGCATGCGTCCACTATACGCTGCATTAACGTTCCCAACATAGATGTAGTCCGTCACTTTGGAGATTACAGGCTCAGAGTAGTGGAAGTGTTCCGGCCCACTCGGTTTGGGTTCAGGTGTCTCGGGGCTAGTCTTGATACCCCCTGGTCCCGCTCTGCGGCGCAGTTTCTTGGAGCCAGAGCGCGATGGAGGGTTTGAGTCagactcagagctgctgttccagGGTGGAGAGAAGAGCGAGAAGCGGCTGGAGGACTTGCTCTTGCCGAGAAGCTCCACAGGACTCGAGAGGCCTGAGCTGGAGGCAGTGGTGGAGCCAGAGGCACAGAAAAGAGAAGCCCGCTCTAGAGAACCTGTGCTGCTGGCTGCACCAGCGCTGTGGGCCTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108274466 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175092 True 3263 lncRNA 0.42 1 13443129 13446391

Neighbor

gene id symbol gene type direction distance location
myod1 myod1,LOC107758742 coding upstream 84975 13356233 ~ 13358154 (+)
mob2a mob2,LOC108274974,LOC108411394 coding upstream 227138 13170695 ~ 13215991 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding upstream 281200 13123143 ~ 13161929 (+)
phlda2 phlda2,phla2 coding upstream 579574 12862501 ~ 12863555 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding upstream 592736 12837011 ~ 12850393 (+)
pdcd2l pdcd2l coding downstream 18882 13465273 ~ 13470743 (+)
banp banp,LOC107742045 coding downstream 26793 13473184 ~ 13522795 (+)
LOC113529436 znf469 coding downstream 77231 13523622 ~ 13712474 (+)
LOC113529751 rassf8,LOC108428816 coding downstream 295569 13741960 ~ 13757527 (+)
trnar-ucg_5 NA coding downstream 374199 13820590 ~ 13820662 (+)
G147817 NA non-coding upstream 5748 13437114 ~ 13437381 (+)
G147785 tnni2a.3 non-coding upstream 6220 13414301 ~ 13436909 (+)
G147791 NA non-coding upstream 10545 13413492 ~ 13432584 (+)
G147814 NA non-coding upstream 43479 13398824 ~ 13399650 (+)
G147792 NA non-coding upstream 50380 13392098 ~ 13392749 (+)
G147821 NA non-coding downstream 1044 13447435 ~ 13447801 (+)
G147977 NA non-coding downstream 301856 13748247 ~ 13750306 (+)
G148321 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203 non-coding downstream 608071 14054462 ~ 14056322 (+)
G148326 NA non-coding downstream 637943 14084334 ~ 14084563 (+)
G148327 NA non-coding downstream 638828 14085219 ~ 14085421 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 53933 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 89867 13349323 ~ 13353262 (+)
G147542 NA other upstream 525875 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1845159 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2136811 11295128 ~ 11306318 (+)
ces2b LOC108275184 other downstream 314943 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 344582 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 2116915 15563306 ~ 15652684 (+)
svip svip other downstream 2274887 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 2361599 15807990 ~ 15822591 (+)

Expression


Co-expression Network