zgc:172145 (LOC108275003)


Basic Information

Item Value
gene id zgc:172145
gene name LOC108275003
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13349323 ~ 13353262 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175114
CCTGGAAGCGATTCACTGAGTCGAGTGGGGTGCAGATAGCGCGgacatttttaactttatttctgcACTTTAATTTGCTGTAGGAGATGAAACAAGCGCTTTATAAAGGCATGTGAGAGACTCAGAAAGCGCGTGTAGTTGTTCAGAAACAGCGGCGTCGTCGAAAGAGGAACCGTTTGCTCTCTGTAGCTTTGCAGCTCCAATATGTCGGAACCAGCAGGGAAGAGATTAAAAACTAATGTACCCATGTGTAAAGCACACCGCGTACTGGAGAGCAGTAACGCGAAGCAAAATCTACCCAGCGTTGTTGAGGAAGGTTTATGTGGAGTTTCAACTTCAGTGATGGAGTTTGCCTACCGACTCGAGGCGCTGgCTAAGATCTTTGAGCAGGATGATCTGCCCTTGTCCCATGTGGCTGCTTTCTTCCATCAGGAGTCTATGAGGGAGCAGGCACAGGCCGAGGCCATGCTACAGTACCTGTCTGAGCGTGGGGGACACTACTGCAACAAAGTTATTCAGAGCTCATGCTGGGCCAGTGGAAGGAGGAGATGGCCATCATGGTGGAACTGTGTCAGCTAGCACGTGAGCATGAGGACCCTCACACCACCAGTGTGATCAAAAGCCACTTCCTCAGTCCACTTGTCCCAAAGATCAAGCTTATGGGTGACTTGTTGACCAACACTCGGAAAGTAGGATGCACCACTGATGGCACTGGAGGATTCGGAGAATATCTCATTGACCAGCTTTACAAGGAACTGAGCAGTGCTTGAAATTTCTGCTAATAAAGCCTCCTACTGATGCAATAAAAACCTGACCAGCAGTATATAGAGTGGAAATGGCCTCTCTTATAGCTTGGGGCGTTGTTAGAACAGTAATGTgacttcattaaaaaacaagttCTTGTGTTAAAACCAAGCCATTCTATTTTGTATAACAAAACTTGATATTATATTAGTAAGTCACTGATGATGTAAGAGTTATGTGAAGTTAATGCTCTTGCTCTATGTTACCAAGGCTTTTTTGATATGTACCCTATCATGTACGTTATCTTTAAATACACTTATATTAAATGGTTACCC
>XM_026918818.2
TGACCTGGAAGCGATTCACTGAGTCGAGTGGGGTGCAGATAGCGCGgacatttttaactttatttctgcACTTTAATTTGCTGTAGGAGATGAAACAAGCGCTTTATAAAGGCATGTGAGAGACTCAGAAAGCGCGTGTAGTTGTTCAGAAACAGCGGCGTCGTCGAAAGAGGAACCGTTTGCTCTCTGTAGCTTTGCAGCTCCAATATGTCGGAACCAGCAGGGAAGAGATTAAAAACTAATGTACCCATGTGTAAAGCACACCGCGTACTGGAGAGCAGTAACGCGAAGCAAAATCTACCCAGCGTTGTTGAGGAAGGTTTATGTGGAGTTTCAACTTCAGTGATGGAGTTTGCCTACCGACTCGAGGCGCTGgCTAAGATCTTTGAGCAGGATGATCTGCCCTTGTCCCATGTGGCTGCTTTCTTCCATCAGGAGTCTATGAGGGAGCAGGCACAGGCCGAGGCCATGCTACAGTACCTGTCTGAGCGTGGGGGACACTACTGCAACAAAGTTATTCAGAGACCAGGCACTGAGCAGGTGTGTGCGCTGCTCCCTGCTCTAGAGCTCATGCTGGGCCAGTGGAAGGAGGAGATGGCCATCATGGTGGAACTGTGTCAGCTAGCACGTGAGCATGAGGACCCTCACACCACCAGTGTGATCAAAAGCCACTTCCTCAGTCCACTTGTCCCAAAGATCAAGCTTATGGGTGACTTGTTGACCAACACTCGGAAAGTAGGATGCACCACTGATGGCACTGGAGGATTCGGAGAATATCTCATTGACCAGCTTTACAAGGAACTGAGCAGTGCTTGAAATTTCTGCTAATAAAGCCTCCTACTGATGCAATAAAAACCTGACCAGCAGTATATAGAGTGGAAATGGCCTCTCTTATAGCTTGGGGCGTTGTTAGAACAGTAATGTgacttcattaaaaaacaagttCTTGTGTTAAAACCAAGCCATTCTATTTTGTATAACAAAACTTGATATTATATTAGTAAGTCACTGATGATGTAAGAGTTATGTGAAGTTAATGCTCTTGCTCTATGTTACCAAGGCTTTTTTGATATGTACCCTATCATGTACGTTATCTTTAAATACACTTATATTAAATGGTTACCCTATTTGTTA

Function

NR:

description
ferritin, heavy subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175114 False 1079 TUCP 0.45 3 13349326 13353253
XM_026918818.2 True 1134 mRNA 0.45 3 13349323 13353262

Neighbor

gene id symbol gene type direction distance location
mob2a mob2,LOC108274974,LOC108411394 coding upstream 133332 13170695 ~ 13215991 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding upstream 187394 13123143 ~ 13161929 (+)
phlda2 phlda2,phla2 coding upstream 485768 12862501 ~ 12863555 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding upstream 498930 12837011 ~ 12850393 (+)
si:ch211-236l14.4 LOC108274486,LOC108439252 coding upstream 542870 12781288 ~ 12806453 (+)
myod1 myod1,LOC107758742 coding downstream 2971 13356233 ~ 13358154 (+)
pdcd2l pdcd2l coding downstream 112011 13465273 ~ 13470743 (+)
banp banp,LOC107742045 coding downstream 119922 13473184 ~ 13522795 (+)
LOC113529436 znf469 coding downstream 170360 13523622 ~ 13712474 (+)
LOC113529751 rassf8,LOC108428816 coding downstream 388698 13741960 ~ 13757527 (+)
LOC117597924 NA non-coding upstream 16279 13329642 ~ 13333044 (+)
G147641 NA non-coding upstream 161039 13187691 ~ 13188284 (+)
G147630 NA non-coding upstream 184533 13164576 ~ 13164790 (+)
G147557 ptprj,LOC108274725 non-coding upstream 250909 12994188 ~ 13098414 (+)
G147602 NA non-coding upstream 258818 13070255 ~ 13090505 (+)
G147784 NA non-coding downstream 6773 13360035 ~ 13371776 (+)
G147787 LOC108274999 non-coding downstream 37055 13390317 ~ 13390708 (+)
G147792 NA non-coding downstream 38836 13392098 ~ 13392749 (+)
G147814 NA non-coding downstream 45562 13398824 ~ 13399650 (+)
G147791 NA non-coding downstream 60230 13413492 ~ 13432584 (+)
G147542 NA other upstream 432069 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1751353 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2043005 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 2753722 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 2801394 10537251 ~ 10547929 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 19610 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 408072 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 437711 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 2210044 15563306 ~ 15652684 (+)
svip svip other downstream 2368016 15721278 ~ 15725091 (+)

Expression


Co-expression Network