G147817


Basic Information

Item Value
gene id G147817
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13437114 ~ 13437381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175130
atatattttttaatatttaatatgcaaCATGAATGAACTATATGCATCATAGgctaaaaatgtctaaatccTTCCTGGGTATATTTATGTCAGTACCTGTAGTGCTTGTATGCCACTTGGCAGAGATAAAGAAGGGCACGTCTCTGCCATGTaccttttcctctcctcttctctttcctttGCTTCAACCTCAAGTAAACCTTTAGCGATGGAGAGCATCAAGCTCTGAAGTGCAGAGTTATAATCAGTTTCTTTGCATTCCTTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175130 True 268 lncRNA 0.37 1 13437114 13437381

Neighbor

gene id symbol gene type direction distance location
myod1 myod1,LOC107758742 coding upstream 78960 13356233 ~ 13358154 (+)
mob2a mob2,LOC108274974,LOC108411394 coding upstream 221123 13170695 ~ 13215991 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding upstream 275185 13123143 ~ 13161929 (+)
phlda2 phlda2,phla2 coding upstream 573559 12862501 ~ 12863555 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding upstream 586721 12837011 ~ 12850393 (+)
pdcd2l pdcd2l coding downstream 27892 13465273 ~ 13470743 (+)
banp banp,LOC107742045 coding downstream 35803 13473184 ~ 13522795 (+)
LOC113529436 znf469 coding downstream 86241 13523622 ~ 13712474 (+)
LOC113529751 rassf8,LOC108428816 coding downstream 304579 13741960 ~ 13757527 (+)
trnar-ucg_5 NA coding downstream 383209 13820590 ~ 13820662 (+)
G147785 tnni2a.3 non-coding upstream 205 13414301 ~ 13436909 (+)
G147791 NA non-coding upstream 4530 13413492 ~ 13432584 (+)
G147814 NA non-coding upstream 37464 13398824 ~ 13399650 (+)
G147792 NA non-coding upstream 44365 13392098 ~ 13392749 (+)
G147787 LOC108274999 non-coding upstream 46406 13390317 ~ 13390708 (+)
G147788 LOC108274466,LOC108428825,LOC107549278,LOC107595234,LOC107758757,LOC107675297,LOC107742063,LOC107675461 non-coding downstream 5748 13443129 ~ 13446391 (+)
G147821 NA non-coding downstream 10054 13447435 ~ 13447801 (+)
G147977 NA non-coding downstream 310866 13748247 ~ 13750306 (+)
G148321 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203 non-coding downstream 617081 14054462 ~ 14056322 (+)
G148326 NA non-coding downstream 646953 14084334 ~ 14084563 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 47918 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 83852 13349323 ~ 13353262 (+)
G147542 NA other upstream 519860 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1839144 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2130796 11295128 ~ 11306318 (+)
ces2b LOC108275184 other downstream 323953 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 353592 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 2125925 15563306 ~ 15652684 (+)
svip svip other downstream 2283897 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 2370609 15807990 ~ 15822591 (+)

Expression


Co-expression Network