G147977


Basic Information

Item Value
gene id G147977
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13748247 ~ 13750306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175308
ggcagacagaatgtttctgtagacttctgaattcattctgaatctaccatcatgagttacatcatcaataaagaatAGTGAGTTCaattaaatttcaatttaaaatttatttgtatagctcttttaacaatggacattgtcacaaagcagctttacagaaataaatatattcaggatataaattgtaaatgtatgaatttatccctaatgaggcgacggtggcaaggaaaaactccctgagacgatatgaggaagaaaccttgagaggaaccagactcaaaagggaacccatcctcatctgggtgtcaacgaatagtgcaattataaataaatcccttctggAAGTgggtactacatggacaaatagtacaattgtgtaaccaagaaattcattacagttttcacatgaagtctgttttgtcaaacctatccactgtccactgatggagacctgagtgcaaaactgcttgtggcaaccgcagccacaaagccaccacagcaatcgcagtcccaagccatcacagttcTACTGCCCATATGaactgcagtccaaagccatctccaggATCCCCAAGCAGTACCacccccagcaatcccaatggtCTTCATGCCATCCATGTGGGGCTAACTCCAACCAGAATTAGGGCATCAAGAtgggatcaggcaggtccagagagcagaaggggtcaggatcactgctatctcaggagtagcatgtgtagctcgacagggtgagagagggagagattgttggGTATGCTTTttgttaaggacaatgtacttagtgtgcagagtgcaagcagagACTCCCACAAGACCATCTATGACAGCATAAcaaaaagggagagccagaaggtaacacagacattagggcgccctgggacataaagcgtcctgccactccaccatcaacaaacctgagtgaacacgtgAGTGGGGGGGACGACAGCaaccaaacatcccagttcaccacaacaatCTATgtctgtgaaccctccagatctgagcccgttccagaagcagccgtgcaagcccaagccatgacactacctccaccgtgcttgactgATTAGCtgatatgttttggatcatgagcagatcctttctttcgtcacactttggcctttccatcactttggtagaggttagtCTTGGTTCCAGAagaaaagaattggccttgctgttccaatactttaggaggggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaatctATATAATAGCGTTCATCCTGTAGCTCTTTgtcaacaacaataataataatatagtccTAAGATTGATCATTATAGAAGACTGACTCACATTCTTGTATGCtctgctatatatatatttttcatttattccagACCTAACTGGAATAACTTTAAAATtgcaaatatgtaaaatattaattaatacctAAACAGATTAATGATGTCTCagcaaataaaatttttttttgcttagagAGACATTTTGGCCAGAGTCGTCCTCTATAGTCTAAACAATTGAGTAATTCAGCGAGTTGCTTAATATGAAAGCAGGAGCTCACCCCAGATGTCTTCATAAACTTCCTGTAGTCCACAAACAATTCTGAATAGTTCAGTTATTAACTTAGTTTAAGTAGTAATGTTGGTGTCTCTATAAACTAGAGTGGTATTTTTGGTACATCATGCAACTTTGCATCAATAGAAAATCTTTGTCTTAAAAGCCATTATCAGCAGTAGGTTCAGTGTTGGATTGGGATTTGTGTGATATTATTAGTGGAGTATAGTATTTCTTCGAGTGGAGCCTATGGAGGCGTTCTGTGGTCTTTGGCTGACAGAAATGATCTACTTTTCCATTCCAGTGCCCTGCACACACAGTAAATTAGCCATGTTCCATTTGGTGAGGCAACTGTTTAAAGCTTCATTCTTTtgtgaaataatgaataaatgaatggactGTTTGTATTGACATTAATCAGGGGGAACCGGGGTGGAGAGTATGATGACTCTTTCAGAAAAGAACCCTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175308 True 2028 lncRNA 0.41 2 13748247 13750306
Loading

Neighbor

gene id symbol gene type direction distance location
LOC113529436 znf469 coding upstream 35773 13523622 ~ 13712474 (+)
banp banp,LOC107742045 coding upstream 225452 13473184 ~ 13522795 (+)
pdcd2l pdcd2l coding upstream 277504 13465273 ~ 13470743 (+)
myod1 myod1,LOC107758742 coding upstream 390093 13356233 ~ 13358154 (+)
mob2a mob2,LOC108274974,LOC108411394 coding upstream 532256 13170695 ~ 13215991 (+)
trnar-ucg_5 NA coding downstream 70284 13820590 ~ 13820662 (+)
man2a2 man2a2,LOC107750719 coding downstream 141453 13891759 ~ 13912016 (+)
accs accs coding downstream 255126 14005432 ~ 14021881 (+)
si:ch211-256a21.4 LOC108275158 coding downstream 271665 14021971 ~ 14027622 (+)
rag1 rag1 coding downstream 296550 14046856 ~ 14053434 (+)
G147821 NA non-coding upstream 300446 13447435 ~ 13447801 (+)
G147788 LOC108274466,LOC108428825,LOC107549278,LOC107595234,LOC107758757,LOC107675297,LOC107742063,LOC107675461 non-coding upstream 301856 13443129 ~ 13446391 (+)
G147817 NA non-coding upstream 310866 13437114 ~ 13437381 (+)
G147785 tnni2a.3 non-coding upstream 311338 13414301 ~ 13436909 (+)
G147791 NA non-coding upstream 315663 13413492 ~ 13432584 (+)
G148321 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203 non-coding downstream 304156 14054462 ~ 14056322 (+)
G148326 NA non-coding downstream 334028 14084334 ~ 14084563 (+)
G148327 NA non-coding downstream 334913 14085219 ~ 14085421 (+)
G148459 NA non-coding downstream 549711 14300017 ~ 14300236 (+)
G148521 NA non-coding downstream 752316 14502622 ~ 14502882 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 359051 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 394985 13349323 ~ 13353262 (+)
G147542 NA other upstream 830993 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 2150277 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2441929 11295128 ~ 11306318 (+)
ces2b LOC108275184 other downstream 11028 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 40667 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 1813000 15563306 ~ 15652684 (+)
svip svip other downstream 1970972 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 2057684 15807990 ~ 15822591 (+)

Expression

G147977 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G147977 Expression in each Bioproject

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G147977 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network