trnar-acg_1


Basic Information

Item Value
gene id trnar-acg_1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13790287 ~ 13790545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175580
GCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGACTCTTTTCACACCATCCGCCACTGTACTTCCCAAACCAGCATATAATGGAAAAACAATTTTTAGGGGAAATCgaggataaataaaaacacgGCAACACGGTGAAATAAATCACGCTGCCAGAATTTCAAAACAGAAAAGCCCCGTATGTTACAACGATCCATCAACAGCCTTGTATGGTGTTCGG
>trnar-acg_1
GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175580 True 250 lncRNA 0.45 1 13790287 13790536
trnar-acg_1 False 73 tRNA 0.56 1 13790473 13790545

Neighbor

gene id symbol gene type direction distance location
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107662464,LOC107742043,LOC107595240 coding downstream 2072 13779189 ~ 13788215 (-)
kras kras,LOC105900436,LOC103038241,LOC107675271,LOC108274959,LOC108428819 coding downstream 49448 13730444 ~ 13740839 (-)
trnae-cuc_22 NA coding downstream 336815 13453401 ~ 13453472 (-)
LOC113529872 LOC108274466,LOC108428825,LOC107758757,LOC107549278,LOC107595234,LOC107742063,LOC107675297,LOC107675461 coding downstream 337551 13443302 ~ 13452736 (-)
LOC113529873 LOC108275296,LOC103034679,LOC108428757,LOC107742056,LOC107675256,LOC107549279,LOC107758755,LOC107595231 coding downstream 350131 13436163 ~ 13440156 (-)
polg polg coding upstream 17937 13808482 ~ 13820557 (-)
rhcgb rhcg,LOC103380519 coding upstream 56133 13846678 ~ 13860256 (-)
gdpgp1 gdpgp1 coding upstream 75467 13866012 ~ 13868624 (-)
unc45a unc45a coding upstream 79413 13869958 ~ 13884930 (-)
furinb furin,furinb,LOC107670216,LOC107581806,LOC107720773,LOC107750721 coding upstream 125399 13915944 ~ 14006061 (-)
G148204 NA non-coding downstream 11948 13776934 ~ 13778339 (-)
LOC117597923 NA non-coding downstream 440877 13330368 ~ 13349410 (-)
G148010 NA non-coding downstream 467573 13321480 ~ 13322714 (-)
G147514 phlda2,phla2 non-coding downstream 926420 12834920 ~ 12863867 (-)
G147454 NA non-coding downstream 1044192 12745882 ~ 12746095 (-)
G148371 NA non-coding upstream 208025 13998570 ~ 14021500 (-)
LOC113530044 NA non-coding upstream 722620 14513165 ~ 14515527 (-)
G148612 pdhx non-coding upstream 890970 14681515 ~ 14682753 (-)
G148833 NA non-coding upstream 1246680 15037225 ~ 15037462 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding upstream 1336687 15127232 ~ 15128506 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 325071 13457100 ~ 13465216 (-)
G148019 myod1,LOC107758742,LOC107675253,LOC107675469,LOC107742061,LOC107595269,LOC107549285 other downstream 432149 13356236 ~ 13358138 (-)
LOC113529632 ptprj,LOC108274725 other downstream 680561 12920186 ~ 13109726 (-)
tmem86a tmem86a,LOC107707555,LOC107688565,LOC107709947,LOC107675270 other downstream 1179936 12601576 ~ 12610351 (-)
LOC113529769 tbc1d9b,LOC108438817,LOC107662168 other downstream 2324373 11441480 ~ 11465914 (-)
LOC113529512 NA other upstream 35237 13825782 ~ 13835755 (-)
G148647 fjx1 other upstream 1019459 14810004 ~ 14812705 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other upstream 1295568 15086113 ~ 15088060 (-)
LOC113529695 NA other upstream 1429425 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 1921448 15711993 ~ 15719575 (-)

Expression


Co-expression Network