LOC113529512


Basic Information

Item Value
gene id LOC113529512
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13825782 ~ 13835755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175596
TCAATCTCGCGTCCATCCTGTGAATCTCCCAAACCATGCGACTTCTGCACAGGTTTAACAGAGACCCGTTCCAATCTGCAACATGCCGTAATGAAGTAACGTGTCATGAACTTAGGCAGCATGCTGTACAGAAGAAGTGACAGATACATAGATGCTGAGAGGAAAACGCCTTTGTCCGTGACTGCCATATTTCTCCTCATGCCAAGAGATCTCCAGTGCCATCTGGGGGATATGGGGCACTGTGCCTGTGCCACCGGCGATGAAGCCCCATCATCTCCCTGGAGCCTTGGCACGATGAATGAGGAAGGCAGGGAGGCCATCTTGAGGGAGATCTCACTGAAACAGCTAAGATGGCTGGACTGGCACACGAGaGATGGCTGTGTATTAAACTGCACATTCTTGATGTGATAACTGCAGCAGAGGACACTGGAAAACATGATGcagaatgacatttttcttgccaagaaaaaatatataatatttgtattgaGAAAATGTGAAGCTTTTAATATTGACAGTCAAATGCatgtattaacacacacacagtgtcacaatCTGTACAGGAACTCTTggcttattgtttt
>XR_003403064.2
CGGAGGGTCGGACATCAGCATCATCAAATGATGATCAATAAAATCGATTTCTGCATGAAGACCGTACAGGACCGGCTGTAGATATAGCTGTATAGCTGAACAAgtcaatataaaacaaaaactttgtCGTCGAGCCCAGGATGCTTATAGGCTACAGGATTAGCACACACATAGAAAGAcacagggtgagagagagagagagagagagagagagagagacgtgtggAGCTACCGCCTGGCTGCAACACCTCCTCACCTACACGTTTGATGAGGATGCCGAAGATGCTGCGTTATAACCCAGAGCCGATTTTAAGCGAATGGAGTCCAGAGACTCCAGGCCGCGACTCCTCTGTTTGCTGTCACTCGGGCAGAAGCAGCAGTAAGCACGCAGAGGGGTTGGTTTCTGTCTTTGGTTATCTAGCTGTATGAGTATAAAAACATGTCATAAAGCTAGATAACCGAAAGCAGAAATGAATCTCAATCTCGCGTCCATCCTGTGAATCTCCCAAACCATGCGACTTCTGCACAGGTTTAACAGAGACCCGTTCCAATCTGCAACATGCCGTAATGAAGTAACGTGTCATGAACTTAGGCAGCATGCTGTACAGAAGAAGTGACAGATACATAGATGCTGAGAGGAAAACGCCTTTGTCCGTGACTGCCATATTTCTCCTCATGCCAAGAGATCTCCAGTGCCATCTGGGGGATATGGGGCACTGTGCCTGTGCCACCGGCGATGAAGCCCCATCATCTCCCTGGAGCCTTGGCACGATGAATGAGGAAGGCAGGGAGGCCATCTTGAGGGAGATCTCACTGAAACAGCTAAGATGGCTGGACTGGCACACGAGaGATGGCTGTGTATTAAACTGCACATTCTTGATGTGATAACTGCAGCAGAGGACACTGGAAAACATGATGcagaatgacatttttcttgccaagaaaaaatatataatatttgtattgaGAAAATGTGAAGCTTTTAATATTGACAGTCAAATGCatgtattaacacacacacagtgtcacaatCTGTACAGGAACTCTTggcttattgttttattttgagtttGTATCCTATTTATTAGACTGTAACTTCTTTGTTCTGCAAAAacatttgtatgtttttcactttgttttacaTATAAGATATGTGAATAAAAGCTATTTCAGAAA

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175596 False 584 TUCP 0.45 3 13825897 13832889
XR_003403064.2 True 1176 lncRNA 0.44 4 13825782 13835755

Neighbor

gene id symbol gene type direction distance location
polg polg coding downstream 5225 13808482 ~ 13820557 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107662464,LOC107742043,LOC107595240 coding downstream 37567 13779189 ~ 13788215 (-)
kras kras,LOC105900436,LOC103038241,LOC107675271,LOC108274959,LOC108428819 coding downstream 84943 13730444 ~ 13740839 (-)
trnae-cuc_22 NA coding downstream 372310 13453401 ~ 13453472 (-)
LOC113529872 LOC108274466,LOC108428825,LOC107758757,LOC107549278,LOC107595234,LOC107742063,LOC107675297,LOC107675461 coding downstream 373046 13443302 ~ 13452736 (-)
rhcgb rhcg,LOC103380519 coding upstream 10923 13846678 ~ 13860256 (-)
gdpgp1 gdpgp1 coding upstream 30257 13866012 ~ 13868624 (-)
unc45a unc45a coding upstream 34203 13869958 ~ 13884930 (-)
furinb furin,furinb,LOC107670216,LOC107581806,LOC107720773,LOC107750721 coding upstream 80189 13915944 ~ 14006061 (-)
rag2 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203,LOC107673237 coding upstream 218683 14054438 ~ 14057208 (-)
G148204 NA non-coding downstream 47443 13776934 ~ 13778339 (-)
LOC117597923 NA non-coding downstream 476372 13330368 ~ 13349410 (-)
G148010 NA non-coding downstream 503068 13321480 ~ 13322714 (-)
G147514 phlda2,phla2 non-coding downstream 961915 12834920 ~ 12863867 (-)
G147454 NA non-coding downstream 1079687 12745882 ~ 12746095 (-)
G148371 NA non-coding upstream 162815 13998570 ~ 14021500 (-)
LOC113530044 NA non-coding upstream 677410 14513165 ~ 14515527 (-)
G148612 pdhx non-coding upstream 845760 14681515 ~ 14682753 (-)
G148833 NA non-coding upstream 1201470 15037225 ~ 15037462 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding upstream 1291477 15127232 ~ 15128506 (-)
trnar-acg_1 NA other downstream 35237 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 360566 13457100 ~ 13465216 (-)
G148019 myod1,LOC107758742,LOC107675253,LOC107675469,LOC107742061,LOC107595269,LOC107549285 other downstream 467644 13356236 ~ 13358138 (-)
LOC113529632 ptprj,LOC108274725 other downstream 716056 12920186 ~ 13109726 (-)
tmem86a tmem86a,LOC107707555,LOC107688565,LOC107709947,LOC107675270 other downstream 1215431 12601576 ~ 12610351 (-)
G148647 fjx1 other upstream 974249 14810004 ~ 14812705 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other upstream 1250358 15086113 ~ 15088060 (-)
LOC113529695 NA other upstream 1384215 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 1876238 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 2145409 15981164 ~ 15992094 (-)

Expression


Co-expression Network