G148326


Basic Information

Item Value
gene id G148326
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14084334 ~ 14084563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175720
CTAGGGTTgaaattggagaaaaaaatatttgtataatagCTATACAATCTGCTATATCAATTTCTGTTACATCACCTGTAAAACCttaaaatctcattttattattaatattaaagcatATTAACCAGTAATTACTAAGAATTATTCGGGAGATACAGGGAACATAATAGGAAACGTATGTAGCTATGAGAGTGAGGAATATAAGTCTGTAACCAACTGAGAAATTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175720 True 230 lncRNA 0.30 1 14084334 14084563

Neighbor

gene id symbol gene type direction distance location
iftap c14h11orf74 coding upstream 1507 14056421 ~ 14082827 (+)
rag1 rag1 coding upstream 30900 14046856 ~ 14053434 (+)
si:ch211-256a21.4 LOC108275158 coding upstream 56712 14021971 ~ 14027622 (+)
accs accs coding upstream 62453 14005432 ~ 14021881 (+)
man2a2 man2a2,LOC107750719 coding upstream 172318 13891759 ~ 13912016 (+)
ehf ehf coding downstream 538732 14623295 ~ 14630439 (+)
pdhx pdhx coding downstream 554897 14639460 ~ 14682317 (+)
cd44b NA coding downstream 609069 14693632 ~ 14709434 (+)
fjx1 fjx1 coding downstream 725345 14809908 ~ 14812706 (+)
trim44 trim44,LOC107716865,LOC107719839 coding downstream 753469 14838032 ~ 14886967 (+)
G148321 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203 non-coding upstream 28012 14054462 ~ 14056322 (+)
G147977 NA non-coding upstream 334028 13748247 ~ 13750306 (+)
G147821 NA non-coding upstream 636533 13447435 ~ 13447801 (+)
G147788 LOC108274466,LOC108428825,LOC107549278,LOC107595234,LOC107758757,LOC107675297,LOC107742063,LOC107675461 non-coding upstream 637943 13443129 ~ 13446391 (+)
G147817 NA non-coding upstream 646953 13437114 ~ 13437381 (+)
G148327 NA non-coding downstream 656 14085219 ~ 14085421 (+)
G148459 NA non-coding downstream 215454 14300017 ~ 14300236 (+)
G148521 NA non-coding downstream 418059 14502622 ~ 14502882 (+)
G148551 NA non-coding downstream 638788 14723351 ~ 14738350 (+)
G148645 NA non-coding downstream 719578 14804141 ~ 14804454 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 255003 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 307463 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 695138 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 731072 13349323 ~ 13353262 (+)
G147542 NA other upstream 1167080 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 1478743 15563306 ~ 15652684 (+)
svip svip other downstream 1636715 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 1723427 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 3749674 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 4097991 18182554 ~ 18184033 (+)

Expression


Co-expression Network