G148521


Basic Information

Item Value
gene id G148521
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14502622 ~ 14502882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU175944
aagtgacttgtggccaagtatggcccatactcggaatttgtgctctgcatttaacccatccaagtgcgcacacacacagtagtgaacacacacacggagcagttgggggttcggtgccttgctcaagggtctcacctcaatCATGGTAtagagggtggaagagagcgctggtcattcactccccccacctacaatccctgccagacttgaacccacaaccttcaggttgcaagtccgactctctatccattaggccacgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175944 True 261 lncRNA 0.53 1 14502622 14502882
Loading

Neighbor

gene id symbol gene type direction distance location
iftap c14h11orf74 coding upstream 419795 14056421 ~ 14082827 (+)
rag1 rag1 coding upstream 449188 14046856 ~ 14053434 (+)
si:ch211-256a21.4 LOC108275158 coding upstream 475000 14021971 ~ 14027622 (+)
accs accs coding upstream 480741 14005432 ~ 14021881 (+)
man2a2 man2a2,LOC107750719 coding upstream 590606 13891759 ~ 13912016 (+)
ehf ehf coding downstream 120413 14623295 ~ 14630439 (+)
pdhx pdhx coding downstream 136578 14639460 ~ 14682317 (+)
cd44b NA coding downstream 190750 14693632 ~ 14709434 (+)
fjx1 fjx1 coding downstream 307026 14809908 ~ 14812706 (+)
trim44 trim44,LOC107716865,LOC107719839 coding downstream 335150 14838032 ~ 14886967 (+)
G148459 NA non-coding upstream 202386 14300017 ~ 14300236 (+)
G148327 NA non-coding upstream 417201 14085219 ~ 14085421 (+)
G148326 NA non-coding upstream 418059 14084334 ~ 14084563 (+)
G148321 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203 non-coding upstream 446300 14054462 ~ 14056322 (+)
G147977 NA non-coding upstream 752316 13748247 ~ 13750306 (+)
G148551 NA non-coding downstream 220469 14723351 ~ 14738350 (+)
G148645 NA non-coding downstream 301259 14804141 ~ 14804454 (+)
G148654 NA non-coding downstream 384652 14887534 ~ 14888203 (+)
G148787 NA non-coding downstream 540251 15043133 ~ 15043881 (+)
G148862 NA non-coding downstream 599596 15102478 ~ 15102695 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 673291 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 725751 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 1113426 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 1149360 13349323 ~ 13353262 (+)
G147542 NA other upstream 1585368 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 1060424 15563306 ~ 15652684 (+)
svip svip other downstream 1218396 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 1305108 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 3331355 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 3679672 18182554 ~ 18184033 (+)

Expression

G148521 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G148521 Expression in each Bioproject

Bar chart with 2 bars.
G148521 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network