G148612 (pdhx)


Basic Information

Item Value
gene id G148612
gene name pdhx
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14681515 ~ 14682753 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176039
ACCACCAAAGCTCACTTTCAGAGCAATTATCTACTGAGACTTCTTTAGTATCCataattttacattataaacaaacatattacacacaataatctTGATTCAGTAgacaattttattttgtgttactgTTTGGTGTATGACACCACAGAgttcccatttatttatttatttttctcatttaaagCATTAGTTGTTGCTTATTCCCAGTGGATGTCTAAATCTCTTGTCTCTCCATCATATAGCACCTTGCAATATCAGGTAAGCACGTTCTTCCAACAAGATATGTGAAGTCAGCAACCATGTCTTTTTTAACTGCTGCTCACGTAATGTCGTAGGGCAGCTGAAGGAATATGGAGAGGGCTAAGTGACTGCCCACTTCTGTGAACGTGAGCTGGCAGCCAGTTGTGTCACTTAGGAAGGACCATGCGCTGGGGCTTCTCCAAATTGTTGCGAAATTTTTCAAGGAAGCGTGAGGCAAGCTCATCGTCTACTAGACGCCCATCGCTGGACAGGGTGACGGTCATTAGGTGTTGCGTGCAGAGGCCCTCTGCTGTCGGTGTCAGCTCGGCCCTGGATCGCCCCACTGCCAGGATACACGCCTGAGGAGGGTTAATCACTGCGCTGAAGCCGCTGATGCCAAACATTCCCAGGTTAGAGATACTGAGGGGGAAGAGAAGAAGCAATATCAAGCAGAACAGCAACTACAGTGCTGTGATTGAgggaaaaatgattttaaatgtgGCAGACTGGGAAAACCAGTCAGATTTTGCTGTAGCTGAATTTTGGAAAACAACAAATCTGAAAAATCGGGTTTTCAACAAAACTCATGTTTCAACAAAACTCATGTTTAGGAGTCGACAGTGCAACAGCAAAAACATTCAGTCGGcctaaagatgtttaaaaact

Function

symbol description
pdhx Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to be part of pyruvate dehydrogenase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHX (pyruvate dehydrogenase complex component X).

NR:

description
PREDICTED: pyruvate dehydrogenase protein X component, mitochondrial isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176039 True 906 lncRNA 0.43 2 14681515 14682753

Neighbor

gene id symbol gene type direction distance location
lrrc4ca lrrc4c,LOC107654122,LOC107581810,LOC107724054,LOC107670198,LOC107750722,LOC107565687 coding downstream 314897 14319121 ~ 14366618 (-)
rag2 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203,LOC107673237 coding downstream 624307 14054438 ~ 14057208 (-)
furinb furin,furinb,LOC107670216,LOC107581806,LOC107720773,LOC107750721 coding downstream 675454 13915944 ~ 14006061 (-)
unc45a unc45a coding downstream 796585 13869958 ~ 13884930 (-)
gdpgp1 gdpgp1 coding downstream 812891 13866012 ~ 13868624 (-)
slc1a2b slc1a2,slc1a2b,LOC107572373,LOC107740049 coding upstream 29245 14711998 ~ 14738351 (-)
pamr1 pamr1,LOC107570358 coding upstream 66024 14748777 ~ 14781337 (-)
LOC113529649 LOC108275035 coding upstream 313354 14996107 ~ 15043838 (-)
cib1 cib1,LOC100536377 coding upstream 411999 15094752 ~ 15098914 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding upstream 430926 15113679 ~ 15114865 (-)
LOC113530044 NA non-coding downstream 165988 14513165 ~ 14515527 (-)
G148371 NA non-coding downstream 660015 13998570 ~ 14021500 (-)
G148204 NA non-coding downstream 903176 13776934 ~ 13778339 (-)
LOC117597923 NA non-coding downstream 1332105 13330368 ~ 13349410 (-)
G148010 NA non-coding downstream 1358801 13321480 ~ 13322714 (-)
G148833 NA non-coding upstream 354472 15037225 ~ 15037462 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding upstream 444479 15127232 ~ 15128506 (-)
G148920 LOC108275086 non-coding upstream 448023 15130776 ~ 15132497 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding upstream 453373 15136126 ~ 15138007 (-)
G148992 NA non-coding upstream 648454 15331207 ~ 15331432 (-)
LOC113529512 NA other downstream 845760 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 890970 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1216299 13457100 ~ 13465216 (-)
G148019 myod1,LOC107758742,LOC107675253,LOC107675469,LOC107742061,LOC107595269,LOC107549285 other downstream 1323377 13356236 ~ 13358138 (-)
LOC113529632 ptprj,LOC108274725 other downstream 1571789 12920186 ~ 13109726 (-)
G148647 fjx1 other upstream 127251 14810004 ~ 14812705 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other upstream 403360 15086113 ~ 15088060 (-)
LOC113529695 NA other upstream 537217 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 1029240 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 1298411 15981164 ~ 15992094 (-)

Expression


Co-expression Network