G148654


Basic Information

Item Value
gene id G148654
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14887534 ~ 14888203 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176101
GGCAGCACTTTGGCAATGTGCATATGGGAATATTAATCTAGTCTTGGCCGCAGATATAAGGAGCAACAACAAACATTCAGGCCGTTGTCTGCCTTTATAGAAATAATGGGCTTTAATGGCCCTTTTTATTCTGCCCCCATTGATTGTTAACTCAAGTACTACAACCAGTTCCACACACTTTCTCTGCTCTTTTCGCCTTGCCGCCTGCACCTCCATGCCACGATTGATTTTAAGTCGCATGACAAGTCAAAAGGAGAATAGCGATGGATTTAACGCTGTCGAATAGAGGCACAGCTCAGCACGCAGTCATTATTTCATCATCCAAGACACCTCAATCACCCCTTTCCGCACCATCAACGCTAGTAACAACAAATCTGGTGGAAAACGATGTGCTTGTTAGTGCAGGGAAGTGCAAAAAATGTAAAGGAAGAGGGGCTGATCTAATTTACTAGCCATTTTTAATACAATCAATTACCTCTGCTTTCCGAGCTCATCTGTGCTCGTCTGTTTTTTCCGCCACCACACACATCTCCTGCTCTGGAGGACAACAGATAATGTTTGTGTTGACAACAATTAATAGCTTTGTGGGTGAGATTAAATTAGTTACGTGAGGTGGGTGTAACACGCAGCAGCACTTTATAGTGGAGTGTAAATTaaccttttgtttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176101 True 670 lncRNA 0.43 1 14887534 14888203

Neighbor

gene id symbol gene type direction distance location
trim44 trim44,LOC107716865,LOC107719839 coding upstream 567 14838032 ~ 14886967 (+)
fjx1 fjx1 coding upstream 74828 14809908 ~ 14812706 (+)
cd44b NA coding upstream 178100 14693632 ~ 14709434 (+)
pdhx pdhx coding upstream 205217 14639460 ~ 14682317 (+)
ehf ehf coding upstream 257095 14623295 ~ 14630439 (+)
ldlrad3 ldlrad3,LOC107570178 coding downstream 23024 14911227 ~ 14994873 (+)
LOC113530018 rccd1 coding downstream 201072 15089275 ~ 15096339 (+)
metap2b metap2,LOC108275287,LOC108428789,LOC107732295,LOC107701059,LOC107676466,LOC107754321,LOC107569354 coding downstream 214721 15102924 ~ 15111187 (+)
tmpob LOC108275086 coding downstream 239164 15127367 ~ 15132498 (+)
slc25a3b slc25a3,slc25a3b,LOC107551415,LOC107732290 coding downstream 244719 15132922 ~ 15138489 (+)
G148645 NA non-coding upstream 83080 14804141 ~ 14804454 (+)
G148551 NA non-coding upstream 149184 14723351 ~ 14738350 (+)
G148521 NA non-coding upstream 384652 14502622 ~ 14502882 (+)
G148459 NA non-coding upstream 587298 14300017 ~ 14300236 (+)
G148327 NA non-coding upstream 802113 14085219 ~ 14085421 (+)
G148787 NA non-coding downstream 154930 15043133 ~ 15043881 (+)
G148862 NA non-coding downstream 214275 15102478 ~ 15102695 (+)
G148866 NA non-coding downstream 248287 15136490 ~ 15137999 (+)
LOC113530229 NA non-coding downstream 248298 15136501 ~ 15136728 (+)
LOC113530230 NA non-coding downstream 249539 15137742 ~ 15137952 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1058203 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1110663 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 1498338 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 1534272 13349323 ~ 13353262 (+)
G147542 NA other upstream 1970280 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 675103 15563306 ~ 15652684 (+)
svip svip other downstream 833075 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 919787 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2946034 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 3294351 18182554 ~ 18184033 (+)

Expression


Co-expression Network