G148833


Basic Information

Item Value
gene id G148833
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15037225 ~ 15037462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176283
tgggatgcactattataggaaaataattaacaaaaggGTGTAAGACTAATTCTCCTTCACatcaggccgcatcacaccaacccatcattgattaattttctataacagcatttccAAAGTGTGTCATTCCTCCTATATCATTGGCAATCAttacaaaaacatgaacataaatgtcaaataagttataaaaataactccttacagaaagctccaccatatcaacaattctaCATTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176283 True 238 lncRNA 0.33 1 15037225 15037462

Neighbor

gene id symbol gene type direction distance location
pamr1 pamr1,LOC107570358 coding downstream 255888 14748777 ~ 14781337 (-)
slc1a2b slc1a2,slc1a2b,LOC107572373,LOC107740049 coding downstream 298874 14711998 ~ 14738351 (-)
lrrc4ca lrrc4c,LOC107654122,LOC107581810,LOC107724054,LOC107670198,LOC107750722,LOC107565687 coding downstream 670607 14319121 ~ 14366618 (-)
rag2 rag2,LOC107720771,LOC107581808,LOC107750738,LOC107670203,LOC107673237 coding downstream 980017 14054438 ~ 14057208 (-)
furinb furin,furinb,LOC107670216,LOC107581806,LOC107720773,LOC107750721 coding downstream 1031164 13915944 ~ 14006061 (-)
cib1 cib1,LOC100536377 coding upstream 57290 15094752 ~ 15098914 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding upstream 76217 15113679 ~ 15114865 (-)
pthlhb LOC108274596 coding upstream 78560 15116022 ~ 15117778 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding upstream 107950 15145412 ~ 15149282 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding upstream 127103 15164565 ~ 15170707 (-)
G148612 pdhx non-coding downstream 354472 14681515 ~ 14682753 (-)
LOC113530044 NA non-coding downstream 521698 14513165 ~ 14515527 (-)
G148371 NA non-coding downstream 1015725 13998570 ~ 14021500 (-)
G148204 NA non-coding downstream 1258886 13776934 ~ 13778339 (-)
LOC117597923 NA non-coding downstream 1687815 13330368 ~ 13349410 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding upstream 89770 15127232 ~ 15128506 (-)
G148920 LOC108275086 non-coding upstream 93314 15130776 ~ 15132497 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding upstream 98664 15136126 ~ 15138007 (-)
G148992 NA non-coding upstream 293745 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 339741 15377203 ~ 15377406 (-)
G148647 fjx1 other downstream 224520 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1201470 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1246680 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1572009 13457100 ~ 13465216 (-)
G148019 myod1,LOC107758742,LOC107675253,LOC107675469,LOC107742061,LOC107595269,LOC107549285 other downstream 1679087 13356236 ~ 13358138 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other upstream 48651 15086113 ~ 15088060 (-)
LOC113529695 NA other upstream 182508 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 674531 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 943702 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 1103657 16141119 ~ 16228334 (-)

Expression


Co-expression Network