XLOC_005248 (hexim1)


Basic Information

Item Value
gene id XLOC_005248
gene name hexim1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15565344 ~ 15567104 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010094
GGCCTGGGCAGAAAACTATTGTTGAATTGTGGGTAATGGAGGTTTCGTGGCAGAGATGTGGTCGTGCGCAATGCTTCGTGGGACTTCAAGTCCCACAAAACACGAGAAAACTGTAGGGCTGGCCGCATGCGCTTTTACGTGGGGGAGGCAATAAATTCACAAGCTCCACTCCTCTCCGAAGCAGAAGCGAATTGGAGATTGACTTGGAGGGAGATGCTCTTGTATTCGTTGAGACAGCGTTAAATAGTAGAGGGAACGTAAATAGTTAAAATCAACAGTATCATATAGCATATCAACTCAAACACGAGATTTGAGTTAAACGGTGGGAGTGTGCAGTTATGGAGCTTATTAAAGAAGAAACTGCACCGGAGGATGACAGCAGGGGGCGGCAGAGAGATTATCGGACGAGTGTTGTCTCCTCGAAACAAGTGCAAAGAAATCAGTTTGAGATTTGTCCTGGTTTGGTGTCAGGAGATGTGCATCCAATGTGTCGGGATCGGAGTGATCCTGAGCCCAGGACTGGCGATGCAGCAAGTGACGACGGGTTTCCTGCAGACAAAACGAGTAGTAAGAGAGACTCTGAATGCGCGGCAGTAAACACCGATGGGGTGTCTGATGGCCGCCAGGGCAAAAAGAAACACAGACGGCGACCCTCCAAGAAGAAGCGCCGCTGGAAGCCGTATTTTAAACTGACATGGGAGGAGAAAAAAGAGCTGGATGAACGCGAGACCGCGCGGGCGTCGCGAGTGCGCGCCGAAATGTTCGCTAAAGGTCTCCCCGTCGCACCGTACAACACCACCCAGTTCTTAATGGAGGAGCACGACCGTGAAGAACCCGATCTCAACACTGAGCTGGGAGGTCGAAAATCCGGGGCAATCCGCTCCGAGGACACGGCCAGTGAGGACGAGAATTTCGAGGCTGAAGAGGACGACGAGGAGGAAGGCGGCGGAGGTAGCGACGGTATGGGAAGACCAGGGCAAGCAGGTGGGGAGTTTTTGCAGAAGGACTTTTCTGAGACCTATGAGAAGTACCATGTAGAGGCGCTTCAGAATATGTCTAAACAAGAACTAGTTCGGGAATACCTGGAGCTGGAGAAGTGCATGTCGCGGTTAGAAGAGGAGAACAACTGGCTTCGCCACGTCCGGAGAAACCCCGAGTCCCCTGCTGACGGGACTGGCTCCCAGCGCGTGCGAGAACTGGAGGTTGAAGTGGAGAAACTGAGGGCCGAGAATAACGAGTTATTACTAAAAACGCCCGCAAGTAATGAGCCAGGACTCAATCAGTCTCAGCCGAGCTGAATCGTTTTTCCGTTTTTACACGGAAATTGACACCGTTTCTGTAAATTTCATGTCTGTTGTAACAATACTCTCTCGGCCTTTGtcataagttttttttctttctctttttttgacaACTATTCTTCTTGTGCCCATAATTCTTGGTCAGTCCACTTAAATATACGTTCGTTATTTGTACAATTGAGCTGATAAAACGAGTACGTTAACCTGCTTTCCATTTGTAAGGATTAAAAACGGTCAAAACTGAG

Function

symbol description
hexim1 Predicted to enable 7SK snRNA binding activity and cyclin-dependent protein serine/threonine kinase inhibitor activity. Acts upstream of or within protein-containing complex assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in head. Orthologous to several human genes including HEXIM1 (HEXIM P-TEFb complex subunit 1).

GO:

id name namespace
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0097322 7SK snRNA binding molecular_function
GO:0017069 snRNA binding molecular_function
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4637 Predicted to enable 7SK snRNA binding activity and cyclin-dependent protein serine/threonine kinase inhibitor activity. Acts upstream of or within protein-containing complex assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in head. Orthologous to several human genes including HEXIM1 (HEXIM P-TEFb complex subunit 1).

Ensembl:

ensembl_id ENSDARG00000036482

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010094 True 1546 mRNA 0.49 2 15565344 15567104

Neighbor

gene id symbol gene type direction distance location
XLOC_005247 NA coding downstream 115086 15445574 ~ 15450258 (-)
XLOC_005246 NA coding downstream 321344 15242567 ~ 15244000 (-)
XLOC_005245 sult1st6 coding downstream 360257 15197857 ~ 15205087 (-)
XLOC_005244 NA coding downstream 439295 15125409 ~ 15126049 (-)
XLOC_005243 NA coding downstream 445231 15117887 ~ 15120113 (-)
XLOC_005249 acbd4 coding upstream 1657 15568761 ~ 15620090 (-)
XLOC_005250 NA coding upstream 290628 15857732 ~ 15859869 (-)
XLOC_005251 kcnj19b coding upstream 495456 16062560 ~ 16084835 (-)
XLOC_005252 hectd2 coding upstream 765312 16332416 ~ 16380961 (-)
XLOC_005253 pcgf5b coding upstream 838494 16405598 ~ 16435150 (-)
XLOC_005240 NA non-coding downstream 724785 14839787 ~ 14840559 (-)
XLOC_005255 CABZ01044816.1 non-coding upstream 926248 16493352 ~ 16493468 (-)
XLOC_005258 FO704724.2 non-coding upstream 1005091 16572195 ~ 16572309 (-)
XLOC_005260 BX465840.1 non-coding upstream 1031639 16598743 ~ 16598857 (-)
XLOC_005263 BX465840.2 non-coding upstream 1087577 16654681 ~ 16654795 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G261650 NA non-coding CI01000063 null 64019 ~ 66028 (+)