G148926 (LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471)


Basic Information

Item Value
gene id G148926
gene name LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15127232 ~ 15128506 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176391
TTCCTGATCGACTTCTGTTAGAGATGACTGGTGTTATTTCGTCGTCACTGGAGAAAGTATCGGCTGGAGAGTGTTTCTTGTTCAGGACGGTCAGGTGTTTGAGGTAAAGTTGGACATAAACATCTTTCCTGTGCTCGCCGCTGGGAAGAGGAACCTCGTTCGCAAGCAGTTCGCTCTTAAGCTTGTCCTTTGTGAGAACGGACGGGTCTTCAAGGAATTCCGCCATGCTTTACCGGCTTGTTTCCAGACCAAAGTAGACACAGTGTATCTAATAAAAAGCCAGTTCAGTTTAAAGTAAGTAAAGCGCAATAGTGAGCCACAGAATCCCCCTCTTGAAGAGTTAATGAACTTGCGCCGTTGTTGACAAACGTCACACCGGCTCGAGCGCTTCACCGCGTTTGAATAGACTCACAGATTTACGCGGCAAAACACTTAATGTTACTCTTTACTTCCAAACACGGCTTCTTAGCGCCGCCCAACACCCATGTcttaacaaatacaaaaatgcagttATGTTGCAAGGCTTTGCTTTGTTTATACATAAGTAAGAACAAATAACTACCTCTGTTACTGGTTTGCTGTATCCCGAT
>TU176392
CCTGACCTCACTGCCTTCACTTACTGTAAACTGTGTGAAGATTTTAGCCAGTTTGAAGCTTTCAGACCTTAAATAAATAggttaaataaagaaaacacatgCTGACAGTTTCAAGTCAAGAAACAATATGTCTATTGAGgcattgtctgtttttattgtgaATTATTTTGTAATAGCTTGGGAAATACTGTCACACTTAAATTTTTAGCACAGTTTTTGTCACTGTAGGGCAGAAAACCTACCGACTATAGGACCAGGATTGATGCCATACTTCAGCAGCTGATCCTTCAAGTCGCTGTCGGTCAGACTGGCAACATCCACCTCCTCTTTTCGATTCTTATCCGTCTTTTTTGTAGCTTTCTGCAGATTGATCACAAACCGATTAACTCACTTAATGAACTGAACACAGGGTCTTAGAagggctttgttttttttttaatcacacttaCTTTTCCTGATCGACTTCTGTTAGAGATGACTGGTGTTATTTCGTCGTCACTGGAGAAAGTATCGGCTGGAGAGTGTTTCTTGTTCAGGACGGTCAGGTGTTTGAGGTAAAGTTGGACATAAACATCTTTCCTGTGCTCGCCGCTGGGAAGAGGAACCTCGTTCGCAAGCAGTTCGCTCTTAAGCTTGTCCTTTGTGAGAACGGACGGGTCTTCAAGGAATTCCGCCATGCTTTACCGGCTTGTTTCCAGACCAAAGTAGACACAGTGTATCTAATAAAAAGCCAGTTCAGTTTAAAGTAAGTAAAGCGCAATAGTGAGCCACAGAATCCCCCTCTTGAAGAGTTAATGAACTTGCGCCGTTGTTGACAAACGTCACACCGGCTCGAGCGCTTCACCGCGTTTGAATAGACTCACAGATTTACGCGGCAAAACACTTAATGTTACTCTTTACTTCCAAACACGGCTTCTTAGCGCCGCCCAACACCCATGTcttaacaaatacaaaaatgcagttATGTTGCAAGGCTTTGCTTTGTTTATACATAAGTAAGAACAAATAACTACCTCTGTTACTGGTTTGCTGTATCCCGAT
>TU176393
TTCCTGATCGACTTCTGTTAGAGATGACTGGTGTTATTTCGTCGTCACTGGAGAAAGTATCGGCTGGAGAGTGTTTCTTGTTCAGGACGGTCAGGTGTTTGAGGTAAAGTTGGACATAAACATCTTTCCTGTGCTCGCCGCTGGGAAGAGGAACCTCGTTCGCAAGCAGTTCGCTCTTAAGCTTGTCCTTTGTGAGAACGGACGGGTCTTCAAGGAATTCCGCCATGCTTTACCGGCTTGTTTCCAGACCAAAGTAGACACAGTGTATCTAATAAAAAGCCAGTTCAGTTTAAAGTAAGTAAAGCGCAATAGTGAGCCACAGAATCCCCCTCTTGAAGAGTTAATGAACTTGCGCCGTTGTTGACAAACGTCACACCGGCTCGAGCGCTTCACCGCGTTTGAATAGACTCACAGATTTACGCGGCAAAACACTTAATGTTACTCTTTACTTCCAAACACGGCTTCTTAGCGCCGCCCAACACCCATGTcttaacaaatacaaaaatgcagttATGTTGCAAGGCTTTGCTTTGTTTATACATAAGTAAGAACAAATAACTACCTCTGTTACTGGTTTGCTGTATCCCGATGGCCCGTGCGCGCCTCTAGCTGGCACTGTGAAATAAAACGAGCGCCTATTGGCTAGTTTGGTTTAGTAAGGCGTGCTGGGATTGGTGCAGAGCAAACGACGACCAACCGCCGCATCAAAGAGCGCGATAATGGGCTCGATGAAGCCGCGGGGGCGCGCGCACCCTTTGAAACACACCGTTTCGGTTTAGCTTGTCTGAATGTCTGTAAGAGACGCAAGAACAGCAGAATAAATG

Function

NR:

description
PREDICTED: lamina-associated polypeptide 2, isoforms beta/gamma-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176391 False 590 lncRNA 0.45 1 15127466 15128055
TU176392 True 1041 lncRNA 0.42 1 15127466 15128506
TU176393 False 824 lncRNA 0.47 1 15127232 15128055

Neighbor

gene id symbol gene type direction distance location
pthlhb LOC108274596 coding downstream 9454 15116022 ~ 15117778 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding downstream 12367 15113679 ~ 15114865 (-)
cib1 cib1,LOC100536377 coding downstream 28318 15094752 ~ 15098914 (-)
LOC113529649 LOC108275035 coding downstream 83394 14996107 ~ 15043838 (-)
pamr1 pamr1,LOC107570358 coding downstream 345895 14748777 ~ 14781337 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding upstream 16906 15145412 ~ 15149282 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding upstream 36059 15164565 ~ 15170707 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding upstream 65812 15194318 ~ 15199670 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding upstream 71509 15200015 ~ 15217057 (-)
irx5b LOC108275041 coding upstream 153352 15281858 ~ 15285227 (-)
G148833 NA non-coding downstream 89770 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 444479 14681515 ~ 14682753 (-)
LOC113530044 NA non-coding downstream 611705 14513165 ~ 14515527 (-)
G148371 NA non-coding downstream 1105732 13998570 ~ 14021500 (-)
G148204 NA non-coding downstream 1348893 13776934 ~ 13778339 (-)
G148920 LOC108275086 non-coding upstream 2270 15130776 ~ 15132497 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding upstream 7620 15136126 ~ 15138007 (-)
G148992 NA non-coding upstream 202701 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 248697 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 596745 15725251 ~ 15725901 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 39172 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 314527 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1291477 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1336687 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1662016 13457100 ~ 13465216 (-)
LOC113529695 NA other upstream 91464 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 583487 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 852658 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 1012613 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1924847 17053353 ~ 17058906 (-)

Expression


Co-expression Network