G148992


Basic Information

Item Value
gene id G148992
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15331207 ~ 15331432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176480
GCCTGGGTGAACCTCATGCTGCTGTCAAAGTGTGTGCCATTTGACAGGCCAAACAAAAAGCTTTGTTGGCCACTTGCTGGACAGCTTTACTCTGTAATCAGCTAGTACACGGGGAATCGGTTTTTAATTATCCTTTGTGTACATTGTCTTTCTCGTGTGCTCAAAAACACACCTGCAAATCTAGGGCAACCCTCCCTCTTCACAATAACTTCCAAATCACTCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176480 True 226 lncRNA 0.45 1 15331207 15331432

Neighbor

gene id symbol gene type direction distance location
irx5b LOC108275041 coding downstream 45980 15281858 ~ 15285227 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding downstream 114150 15200015 ~ 15217057 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding downstream 131537 15194318 ~ 15199670 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding downstream 160500 15164565 ~ 15170707 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding downstream 181925 15145412 ~ 15149282 (-)
rpgrip1l rpgrip1l coding upstream 53656 15385088 ~ 15405178 (-)
hsd17b2 LOC108275401 coding upstream 117310 15448742 ~ 15452712 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding upstream 122748 15454180 ~ 15465781 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding upstream 137290 15468722 ~ 15478312 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding upstream 149606 15481038 ~ 15520462 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 193200 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 198710 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 202701 15127232 ~ 15128506 (-)
G148833 NA non-coding downstream 293745 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 648454 14681515 ~ 14682753 (-)
G149057 NA non-coding upstream 45771 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 393819 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 419727 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 426852 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 566458 15897890 ~ 15898161 (-)
LOC113529695 NA other downstream 102222 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 243147 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 518502 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1495452 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1540662 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 380561 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 649732 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 809687 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1721921 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2873219 18204651 ~ 18214487 (-)

Expression


Co-expression Network