G149027


Basic Information

Item Value
gene id G149027
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15451576 ~ 15451904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176517
attttatgtaatgtgtcttacattttatgacaaaatatataattttgtcaAATAAGAATACATCACTGTTGAAGGACAAGCGAATCTTTGTATCAGGTTTTGATAAGGAATTAACTACAACAAGCTCTCAAGTCTAGTACCTACTGCAGTTTTTTGGTACTTTTTAGTTACCTGTCTCTCCTATTTGACTCTTGATAAGCTTATGAGCTTCAGAGATTTGGCTGATGTTTGTGACATCCATCTGTAGGATGGTAAGCTGTGGAGAGGAAACTTCCCTGAGCTCCTGAGCACCAGGTCCGAACTCCTCCAGCACTCCGGCATACACCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176517 True 329 lncRNA 0.39 1 15451576 15451904

Neighbor

gene id symbol gene type direction distance location
mphosph6 mphosph6 coding upstream 2835 15446796 ~ 15448741 (+)
snx20 snx20 coding upstream 5521 15444108 ~ 15446055 (+)
sall1b LOC108274520 coding upstream 18037 15427516 ~ 15433539 (+)
rbl2 rbl2,LOC107659865 coding upstream 29723 15406172 ~ 15421853 (+)
irx3b LOC108275042 coding upstream 103012 15346438 ~ 15348564 (+)
lrrk2 lrrk2 coding downstream 125279 15577183 ~ 15605737 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding downstream 157536 15609440 ~ 15620419 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding downstream 179151 15631055 ~ 15634990 (+)
fancf fancf coding downstream 299235 15751139 ~ 15752526 (+)
sigirr sigirr coding downstream 380275 15832179 ~ 15841507 (+)
LOC113530090 NA non-coding upstream 146191 15298770 ~ 15305385 (+)
G148881 NA non-coding upstream 194066 15203735 ~ 15257510 (+)
G148872 NA non-coding upstream 257947 15192755 ~ 15193629 (+)
G148869 NA non-coding upstream 302304 15148686 ~ 15149272 (+)
LOC113530230 NA non-coding upstream 313624 15137742 ~ 15137952 (+)
G149088 NA non-coding downstream 29348 15481252 ~ 15481570 (+)
G149089 NA non-coding downstream 29783 15481687 ~ 15482028 (+)
G149091 cpne8,LOC108274474 non-coding downstream 31170 15483074 ~ 15483903 (+)
G149131 NA non-coding downstream 115932 15567836 ~ 15569487 (+)
G149248 NA non-coding downstream 259109 15711013 ~ 15711917 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1622245 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1674705 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2062380 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 2098314 13349323 ~ 13353262 (+)
G147542 NA other upstream 2534322 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 111402 15563306 ~ 15652684 (+)
svip svip other downstream 269374 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 356086 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2382333 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2730650 18182554 ~ 18184033 (+)

Expression


Co-expression Network