G149089


Basic Information

Item Value
gene id G149089
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15481687 ~ 15482028 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176586
CTGGAGACAAAATCCTATGACAGAAAACCTGAAATCTCAAATGAGGCATCCATACACAACCAGTGCACATGTCAAACTGAACAAGATTAGCATATTTACTGTTATTGCAATCAGCAAAAGACATTCCAACCTGAGACAATTTAGTACAATGTGTGTTATCACTGTATCAGTCACTTATGCATGTAGTAATCCAAAGCTTTACCAGATGGGCTCTGAACATTTCTACCATCTattcacatttttctgtttactcccttcattcattcctttccttctttttttaatatgtagaCTTACCAGAGTTCTTTATATTTATCTCAAATTCATTTCCTTTCCACTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176586 True 342 lncRNA 0.35 1 15481687 15482028

Neighbor

gene id symbol gene type direction distance location
mphosph6 mphosph6 coding upstream 32946 15446796 ~ 15448741 (+)
snx20 snx20 coding upstream 35632 15444108 ~ 15446055 (+)
sall1b LOC108274520 coding upstream 48148 15427516 ~ 15433539 (+)
rbl2 rbl2,LOC107659865 coding upstream 59834 15406172 ~ 15421853 (+)
irx3b LOC108275042 coding upstream 133123 15346438 ~ 15348564 (+)
lrrk2 lrrk2 coding downstream 95155 15577183 ~ 15605737 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding downstream 127412 15609440 ~ 15620419 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding downstream 149027 15631055 ~ 15634990 (+)
fancf fancf coding downstream 269111 15751139 ~ 15752526 (+)
sigirr sigirr coding downstream 350151 15832179 ~ 15841507 (+)
G149088 NA non-coding upstream 117 15481252 ~ 15481570 (+)
G149027 NA non-coding upstream 29783 15451576 ~ 15451904 (+)
LOC113530090 NA non-coding upstream 176302 15298770 ~ 15305385 (+)
G148881 NA non-coding upstream 224177 15203735 ~ 15257510 (+)
G148872 NA non-coding upstream 288058 15192755 ~ 15193629 (+)
G149091 cpne8,LOC108274474 non-coding downstream 1046 15483074 ~ 15483903 (+)
G149131 NA non-coding downstream 85808 15567836 ~ 15569487 (+)
G149248 NA non-coding downstream 228985 15711013 ~ 15711917 (+)
G149268 NA non-coding downstream 272637 15754665 ~ 15754912 (+)
G149276 NA non-coding downstream 289810 15771838 ~ 15818368 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1652356 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1704816 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2092491 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 2128425 13349323 ~ 13353262 (+)
G147542 NA other upstream 2564433 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 81278 15563306 ~ 15652684 (+)
svip svip other downstream 239250 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 325962 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2352209 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2700526 18182554 ~ 18184033 (+)

Expression


Co-expression Network