G149091 (cpne8,LOC108274474)


Basic Information

Item Value
gene id G149091
gene name cpne8,LOC108274474
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15483074 ~ 15483903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176588
attagtactTATTGAAGAATTACTATGGTAAGACTTGATTACTTACTGCTATGTTAGTAAGGACTTTAATTAAGGAACTGTATAGTAAAATGTTACTAATTATTGTGTAACCAAGAATAAGGCCTGTCTTTCCAGCAGCTCTAAGACTTGTTCAGAAACACAGTGTGGCAGTGGCGTGGAAGAAACCAGAATGGTTAGTAATACAGACTGAAGAGACTGAACACTATCTTCGAAACATGTTCACTCTCCTTTAAATAGGAAGTTAGCACAACCAATTTTGTGATACATTACAAAAAGTTTCAGCTACTTCAGTATGCATGAGGTATATAATTATCTGCTTGTATAAATcacaaacactgtaaacattttGCTCATAGCTCAGCTAGTCGTtcgaaataaaacacaaaaaggatGAGGCATATAATGATGATCGTTTTAGCTAGAAATAAACCTCTCTCACATTATCAAACTCATATATGAGAGCAATGTTATTAATTGCTGTATTCAGGCTTTGAAGTAGAAGTCTCTGTTGGCTCCCTAACTCAGTTGTTGTATGACCTAATACTCGACCAAGTGCAGCAAACCCAGTACTCAGTGCGCCACCATGGTCCTCTTCAGATCTGCGTCTGTAATGACTCTGCAGAGTGCGACAGTGCTGTCAGTGGTTTGGAAGAGTAAGCAGAAGGCGTCAAGCTCGGTTTGATGCCTCTGGTTCTCATGTAGTATAGGAACTGGTCTGGAATTTCAGCCAGGACATCTTTGGCCAGACGGGCCATGCTGAGGATGTGATTCCCTCTTGGGTCAATGTAGTCTCGGAAAGGAACAaactg

Function

symbol description
cpne8 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE8 (copine 8).

NR:

description
PREDICTED: copine-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176588 True 830 lncRNA 0.40 1 15483074 15483903

Neighbor

gene id symbol gene type direction distance location
mphosph6 mphosph6 coding upstream 34333 15446796 ~ 15448741 (+)
snx20 snx20 coding upstream 37019 15444108 ~ 15446055 (+)
sall1b LOC108274520 coding upstream 49535 15427516 ~ 15433539 (+)
rbl2 rbl2,LOC107659865 coding upstream 61221 15406172 ~ 15421853 (+)
irx3b LOC108275042 coding upstream 134510 15346438 ~ 15348564 (+)
lrrk2 lrrk2 coding downstream 93280 15577183 ~ 15605737 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding downstream 125537 15609440 ~ 15620419 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding downstream 147152 15631055 ~ 15634990 (+)
fancf fancf coding downstream 267236 15751139 ~ 15752526 (+)
sigirr sigirr coding downstream 348276 15832179 ~ 15841507 (+)
G149089 NA non-coding upstream 1046 15481687 ~ 15482028 (+)
G149088 NA non-coding upstream 1504 15481252 ~ 15481570 (+)
G149027 NA non-coding upstream 31170 15451576 ~ 15451904 (+)
LOC113530090 NA non-coding upstream 177689 15298770 ~ 15305385 (+)
G148881 NA non-coding upstream 225564 15203735 ~ 15257510 (+)
G149131 NA non-coding downstream 83933 15567836 ~ 15569487 (+)
G149248 NA non-coding downstream 227110 15711013 ~ 15711917 (+)
G149268 NA non-coding downstream 270762 15754665 ~ 15754912 (+)
G149276 NA non-coding downstream 287935 15771838 ~ 15818368 (+)
G149427 NA non-coding downstream 540941 16024844 ~ 16026512 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1653743 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1706203 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2093878 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 2129812 13349323 ~ 13353262 (+)
G147542 NA other upstream 2565820 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 79403 15563306 ~ 15652684 (+)
svip svip other downstream 237375 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 324087 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2350334 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2698651 18182554 ~ 18184033 (+)

Expression


Co-expression Network