LOC113529470 (LOC108275326)


Basic Information

Item Value
gene id LOC113529470
gene name LOC108275326
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15711993 ~ 15719575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176797
AAAGACaatgtgtttctctttcaggaTCAACTTTACATTCAGGTACATGGCACAGTGATGAGAGCATGCTATGCACCAAATTATGCTGATTTATTTCTTGGTTTATGGGAGAATGGTTATGTTTACCAATCTGTGTATACCAGAAAAATGTTATGGTGGGGGCGGTACATAGACAACAGCTTATGTTTTTGAACAGGCACTAAGGATGAATTGCTTCTTTTTTGACCAcattaacaacaataatagAAATGTGAAGTGTTGATTATACACAAAGCAAAATTAGTTTTTTAGGCTTGATGATTTCAAAGGGAGAGGGAGGTTGTCTGTGTACTACTGTAAGCCAATGGATACAAAACACCCTACTAAAAGCTGATAGTTTCCATCTGAAATGGCTAAAGTGCAATATCCCTTTTGGACAATTTCAACGCCTTAGACGTAGTTGAGATACAGACAGTGAATTTCCAGTACAGGCCAGTGTATTAACAGAGTGTTTCACATGTAGCAGGATATCAGATAGACCTGATATGGACTACGCTATGAGGAGACATTTTCAGGTAGCGCATAATGGCAACCCAGACAGTCTCATAGTGGAAGCATTAGAAATAGTAGGTAAAAATGTATGAAGTGGAGATCACTTGAAATTGTTATTACAAAGGGAAGTGTTTTACATAACAGATGAAGGCAGTGGATTTTCCTGGTTTAATTGATTTTAGTCCCTTTCT
>XM_026918672.2
aagaagaagaagaagaagaagaagaggcggaagaagaaaaggaagagggGCTGGCATTGGCGCTGTCTGGTTCTTAGACAAAGCTAATACATGGTACCTGACTGGAGCGTTGCTAACATAACAGATATACTCGAGTATAACTGACAGAGGTTTGTGCATACAGCTGGTGTTGTTTGCAGATTCATTCTCGCTGCTTTGGGCTTTTGGACTGTGAGTCTATGGATGTGATCCGGTGTTTGCGCTCTCTCCTGGACCTCCATGTTCAGCTGCAGAGAGCTGTAGCCCTTCAGGGAGAGATCCAGGCACAGTTTCTTGCTCAGCTTTTACATCCAGACAATGCGAGCCCACAGCAGCTGCCTCTGCCACAGCTGGACTTGACCGGGGACGATCTGGAGCTTTCCCTGTCTGTCTTTGAACGGGCTCTGGATGACAGCAAACTCCCAAAGAGGCAGTGGGGTTCGAGGCTGGCCCAGCTCCTCTGTGTGAAGACATCAGATGAGGATGATCATGAGTTGAGTTATGAAGCTGTAAAGTCAGATGTGAGGAAACAGGCGTGTTCCTTGGAGTATCAGCGGTGGAGCGACTTTAACAAGGTCCAGTATGATCCTCATAAGGGGGTGCGAGAGCTGAAAGTCGGGGTGGAGGAAGCAGCAAAGAAGTGGCTCCAGCCTGAAAAGTGCAGCTCTGAGGAAGTGGTGAGAAAAGTGGCCCTGCAGAAATTCCTCTCCCTTCTCCCACCAGATGCGATTGAGAAGACAAGCGAAGAGCAGCCGCGGAACATGGAGGAGGCTGCCATCATAGCGGCATCTTTCCTGGAAGATAACAGGGCTGAATGGAGCAAACACAGGGAGAGACAACATGATGATGCACATACTGACCATGGCTATTCAAGGGATTATATCAGCTCAAATGAGCTGAAGAAGCTGGACCCAGAGCCAGTCTTCCCATCTGATAGCCACAGCCTGGAAGTTACTGTTGGAGATGAGCATTTTGAAGAGGAAGAGTTTTCGGAAGCTATGCTTTCCCCATCAGCGGTTGACATAAAGCCAGTCCTAAATGCTGAAGACACACCATCCATTCGAAATGATTCTCAACTTTTGCTTCATGGACCCTGCTATAGTGGTGAATCGATTAAGTCTTCACCAAGGCGAGCTAATAAGAATGGGAACATAACCACaggaacaaaattaaaatgcatactTGATTGTCCAGACTGTGGTAGCAAGTTCAAGAGGTTTGACTACCTAAGAAAGCACATATGTACTCCTGGGCAGAGTCTGGGGTGCCAACACTGCGATCTGCGCTTCCCCTCCCTCTCCCAGTTAACAAACCACCTACGCGTACATCGGAAAATGTTGCACTGTCCTGAGTGCAACAAGGCTTTCAGAGACCGATTCAACCTCCGCTGCCaccagcgcacacacacagGCGAGCGCCCCCATATCTGCTCTGACTGCGGCTCTGCGTTTGCTCAGGAGCGAGGACTACAGGAGCACCGCAACATCCACACCGGCGAGAGACCCTTCCAGTGCCCAGTGTGCCGGAAAGGCTTCAGCCACAGCCGCACGCTTGCCAAACACGTGGTTGTCCACTCGGAAGCAAGGCCTTACATGTGCTCCGACTGTGGCAGAGCTTTTAAGATTAAAGACAACCTGCATCAGCATCAGAAGAAAATGCATCCCAGCAAATACTTGTGAACACACCCTATAGATGAAACACAGACTCCTGAATGAGCCATGCAGTTTACAAGCAAAAGTGGTACAATACACAGTTTATTTATACTGAGGTTTTTTTATGCTGCCAGTGACATTCAAGACCTCTCTTTTCACagatacagtgaggggaaataagtatttggacacttttgtttttgttatttaataaacttcCAGTGCAtgtatccacttcaaatttacacacataatgtcttttaactgtaaaagaaaatcaaacaagtacagacgtggacaaatttggtacccttccatgaaaaagaagaacccacaaCTATCTCTGAGATAACTTCTAATTGACAAACGTTAATGGCATCAATCACTGTTAATTCCATGTTAAACACAAATCAGACattacttttgatttttgattaaactgaatattttatataatgaaccaaatgaaaatgacatggACAAAAAAGATGGTACCCttaacttaatattttgttgcaccacCTTTAGCAGCAATCACTGCCAACAAGCAATCGCGGTAGTTTACAAGGAGACATCTGCATCGGGTAACAGatattttggcccactcttcctgagcaaactgctctAACTGCCTGACGTTTGAAGGGTGCCTTCTGCACCCTGCATCTTTCAGATTTTTCAACAGATGTTCAATAGGATTAAGATCAGGGCTCATAGAGGGCCATTTAAGAATAGTCCACAGcttttagctgtgtgttttgggtcattatcctgtTGGAGGACCCATGACCTGCGACTGAGggagagctttctgacactgggcagtatgTTTCTCTCCAGGATGCCTTGACAGTCTTGAGCTTTCATTGTGCTCTGCACAGATACATGGCCCCCTGTGCTAGatgcagcaaagcagccccaaaacatGACTGAGCCccctccatgcttcacagtaggtatggtgttcttttctttgaaagcttaatttttctgtctgtgaacATACAGCTGGTGTGACTTGTCAAAAAGCTCTAGTTTTGTTTCGTCAGTCCAaaggacattctcccagaaACTTTGTCGCTTGTCAACATGCATTTTAGCAAAGTccagtctggatttttttttatgtttttctttcaataatgGTGTTCTCGTGGGTCTTCTTCCATGGAGcccattgttgtttaaaatgtgacGGATGGTGTGATCAGATAGTGACCTACCTTGACCTTGGAGTTCAGCTTGAATGGCTTTGGATTTTTTCCTTGGCTTTTTGTCTACCATCCACACAATCCTTCTTATCAACCTGGGGTTGCGTTTCTTCTTGCAGCCACGTCCTGGGAGGTTGGCTACAATCCCATGGAccttatactttttaataatatttgcaactgtagtcacaggaacatcaaactgcttggagatggtcttGTAGCCTTTACCTTTAAGAGGCTATctacagttttctttctttgctcttCAGACAActctctcctttgctttctctggtccatgttcagtGTAGTGCACACAACGATACCAACCTAGACAGTGgcatattttctctctttaaatacGGTAATTGGCTGTTACAAAGATTAAAGACACCTGTGACTCTAATTACGGTTAAACAATTagtttgaaacatgattagaatgcaatgatttataataatttttttagcGGTACCAAGAAATCTGTCCAAGCTgtttaaattataaacaaaaagtcattgtaaaaaaattgtaatccaAAAAAGGTAATCCAAGGCACACTTCCAATttagattgtttaaaaaaaagcctttatttaAATGGCTATTTCATAGTAGAAATATTTTCtactaaatattttttctacaaaatatgtttttaaatatagtttttatATAGAAACATCAATAATCCACAAGGACTACAGGCTCTTCAGTATTGTTTGAACAGTAGACCACTTATCCTCCTTAGGAAACACTTAGGAAGCTTATCCTCCTGCTGAATTCATTCTTCAGTTAACAGAGTGGACATTTAAAAGACaatgtgtttctctttcaggaTCAACTTTACATTCAGGTACATGGCACAGTGATGAGAGCATGCTATGCACCAAATTATGCTGATTTATTTCTTGGTTTATGGGAGAATGGTTATGTTTACCAATCTGTGTATACCAGAAAAATGTTATGGTGGGGGCGGTACATAGACAACAGCTTATGTTTTTGAACAGGCACTAAGGATGAATTGCTTCTTTTTTGACCAcattaacaacaataatagAAATGTGAAGTGTTGATTATACACAAAGCAAAATTAGTTTTTTAGGCTTGATGATTTCAAAGGGAGAGGGAGGTTGTCTGTGTACTACTGTAAGCCAATGGATACAAAACACCCTACTAAAAGCTGATAGTTTCCATCTGAAATGGCTAAAGTGCAATATCCCTTTTGGACAATTTCAACGCCTTAGACGTAGTTGAGATACAGACAGTGAATTTCCAGTACAGGCCAGTGTATTAACAGAGTGTTTCACATGTAGCAGGATATCAGATAGACCTGATATGGACTACGCTATGAGGAGACATTTTCAGGTAGCGCATAATGGCAACCCAGACAGTCTCATAGTGGAAGCATTAGAAATAGTAGGTAAAAATGTATGAAGTGGAGATCACTTGAAATTGTTATTACAAAGGGAAGTGTTTTACATAACAGATGAAGGCAGTGGATTTTCCTGGTTTAATTGATTTTAGTCCCTTTCTCTGAAATCATTCATACACTTTGCTAATGCATCGTACTAAATTTGTGTGATATTTTTGCACCTTTTGTGTacatgtttctgtttatattcatttatcttcTCTCATTGTGGAACCATCTATTGGTGTCCTTTTAGACCAGCTCTAGACATACTCCCCCTAGTGGCATTTTGACACTAGTCACCTCTGGTTGAGCAGGTGTGTCTAATTTATCTGTTTTAGGTGAGAGCCCATTTGAGgcagttttgtgtttgtggCATTTCTACCGAAATGCGCGAGTCCATCccattatttctatttttttttt

Function

NR:

description
PREDICTED: zinc finger protein 397-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176797 False 722 lncRNA 0.37 1 15712297 15713018
XM_026918672.2 True 4723 mRNA 0.42 4 15711993 15719575

Neighbor

gene id symbol gene type direction distance location
ano3 ano3,LOC107677449,LOC107752468 coding downstream 2814 15652205 ~ 15709179 (-)
fibina LOC108275273 coding downstream 69473 15640341 ~ 15642520 (-)
spi1a LOC108275191,LOC108442687 coding downstream 84538 15620299 ~ 15627455 (-)
slc2a13b slc2a13 coding downstream 134779 15567829 ~ 15577214 (-)
kif21a kif21a,LOC102199929 coding downstream 145585 15522687 ~ 15566408 (-)
LOC113529473 gas2,LOC107728426 coding upstream 7368 15726943 ~ 15749724 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding upstream 40051 15759626 ~ 15769464 (-)
LOC113529694 LOC108274566 coding upstream 50121 15769696 ~ 15771485 (-)
ano5a ano5,LOC107728425 coding upstream 52839 15772414 ~ 15802627 (-)
pkp3a LOC108275089 coding upstream 128563 15848138 ~ 15864702 (-)
G149057 NA non-coding downstream 334587 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 380561 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 573986 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 579496 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 583487 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 5676 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 31584 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 38709 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 178315 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 182865 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 483008 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 623933 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 899288 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1876238 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1921448 13790287 ~ 13790545 (-)
islr2 islr2,LOC107662462 other upstream 261589 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 421544 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1333778 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2485076 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2583567 18303142 ~ 18305329 (-)

Expression


Co-expression Network