G149268


Basic Information

Item Value
gene id G149268
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15754665 ~ 15754912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176815
GTGAAACTCAATAAAGGGCCAAGGTAGTAGATTGATTTGACTTGCAGATCGTGAGAACAGTGAGATCTGTGACTCATGTCTGTTTGGCTTCACTGTAATTAGCAGCCGCACTGCATGTCTAGTACCGGCTTATCACTCTTCAACACTCTTCTATATATTTACCCAGCTTCACACATCACTGGATGGAGtgtcagacagaaagaggacaggaactaaaaaaaagtcaggaaaTGGGTGGAAAGGGAAGG

Function

NR:

description
PREDICTED: glycogen phosphorylase, liver form

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176815 True 248 lncRNA 0.44 1 15754665 15754912

Neighbor

gene id symbol gene type direction distance location
fancf fancf coding upstream 2139 15751139 ~ 15752526 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding upstream 119675 15631055 ~ 15634990 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding upstream 134246 15609440 ~ 15620419 (+)
lrrk2 lrrk2 coding upstream 148928 15577183 ~ 15605737 (+)
mphosph6 mphosph6 coding upstream 305924 15446796 ~ 15448741 (+)
sigirr sigirr coding downstream 77267 15832179 ~ 15841507 (+)
hexa hexa coding downstream 119951 15874863 ~ 15882172 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding downstream 133195 15888107 ~ 15890739 (+)
stoml1 stoml1 coding downstream 136741 15891653 ~ 15895454 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding downstream 142764 15897676 ~ 15905329 (+)
G149248 NA non-coding upstream 42748 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 185178 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 270762 15483074 ~ 15483903 (+)
G149089 NA non-coding upstream 272637 15481687 ~ 15482028 (+)
G149088 NA non-coding upstream 273095 15481252 ~ 15481570 (+)
G149276 NA non-coding downstream 16926 15771838 ~ 15818368 (+)
G149427 NA non-coding downstream 269932 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 272695 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 499772 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 573344 16328256 ~ 16328539 (+)
svip svip other upstream 29574 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 101981 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1925334 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1977794 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2365469 13372872 ~ 13389196 (+)
LOC113529564 ano9,LOC108442698 other downstream 53078 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2079325 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2427642 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2920098 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2966683 18721595 ~ 18724686 (+)

Expression


Co-expression Network