G149276


Basic Information

Item Value
gene id G149276
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15771838 ~ 15818368 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176828
atgtatgttttatttaacatgattTTCATTCATGTATGCAGAACCAATAACAATTTGATAACTGCTTCAGAACCATCATTATATAATCTACGCAGTACATGATGCAACATGTGATGCCATACAATAATCACAAGCTGTCAGTCAAGAAAAGGTACAAGTTGATCAAGTAACAACACAAAGGATTGAATGTGAACTCGTATTCATTTAAATCAGACAGTTTAAAGGCAAAGCTTGTTTAGTGATACGAAGTCTGGCTTCTTTATGTTTTGGCGCACAGAAAATCTAGTGTCTATGGCTTCTAGCATTCTGTGTTCTTaggtatactgtatgtatctaCAACACAGAAGGCTCTTTAAAGGAATTAACAGTCATAATTCAATAACAATCAAAGGCAAACTGAAAGAGctaagaataaaattaaaaagcagACCACCATATAAATAGTTACATCTACAGAAATCAAGTCAAGAAgtcaaaaacagcaaaactagAACATGACAATTATTTGTCACTGCATAAGTATTTGCAAAGGAAGTGTACTGGCAAAATCATCTGCCCTTGGTAATTCTtggcctctttttttttttttttcacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176828 True 596 lncRNA 0.33 2 15771838 15818368

Neighbor

gene id symbol gene type direction distance location
fancf fancf coding upstream 19312 15751139 ~ 15752526 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding upstream 136848 15631055 ~ 15634990 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding upstream 151419 15609440 ~ 15620419 (+)
lrrk2 lrrk2 coding upstream 166101 15577183 ~ 15605737 (+)
mphosph6 mphosph6 coding upstream 323097 15446796 ~ 15448741 (+)
sigirr sigirr coding downstream 13811 15832179 ~ 15841507 (+)
hexa hexa coding downstream 56495 15874863 ~ 15882172 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding downstream 69739 15888107 ~ 15890739 (+)
stoml1 stoml1 coding downstream 73285 15891653 ~ 15895454 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding downstream 79308 15897676 ~ 15905329 (+)
G149268 NA non-coding upstream 16926 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 59921 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 202351 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 287935 15483074 ~ 15483903 (+)
G149089 NA non-coding upstream 289810 15481687 ~ 15482028 (+)
G149427 NA non-coding downstream 206476 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 209239 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 436316 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 509888 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 520222 16338590 ~ 16341963 (+)
svip svip other upstream 46747 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 119154 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1942507 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1994967 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2382642 13372872 ~ 13389196 (+)
G150589 LOC108274445 other downstream 2015869 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2364186 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2856642 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2903227 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2929459 18747827 ~ 18796259 (+)

Expression


Co-expression Network