G149305 (fancf)


Basic Information

Item Value
gene id G149305
gene name fancf
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15751159 ~ 15752470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176867
CAGTTCTGACAGCTAATTTGGTAACATTGCAGCTCTGTAGTGGGAGAGGATGTGCAGATCTGTTAAAGAGCACTGTCTCCCCCTGTCTGCTATCAAACCACACCACTggcttcattttcatttgtagCAACTCAAAAGAGGAACACACAGCTTTCACTTGAGCTGTACAAGCAGGTCTGTCCACACACTCAGTCCCTCGACCTCGAAGTCCCCATCAGCCTGTTTAAGAGCGACCAACTGCTCTACAGTCTCATCTTTTAATGGTGAGCTCCATAAGGACTTAAACCTTTCCGTGAGTGTCGCAAACGACACTGCAGTGTCACAAGGCTGCATCCATAATCCATTGCTCACATCATACACTAAGGAGGAGGCTGACTTTTTTAAACTGTCCCAATAAGCAAGCCTAAACTTATGCCATTGTTGAGAAAGTTTGGTGCATAGTTCAGGAGGTAAAGACTGACACATGCTGTGCAGCAAGCCATCATGTCCTTCTAACCAGTCCTGCAGAAAGGCTTGAGATGCAGTGTCTTCGCTCATGGTGTGTGCTGACAGGAGGGCAGCTGCTATACATGCCAGAAAGCTGTCCTGTCCTTCTCCACTGTCCTCCAGGAAACAATCCAGCAGTTTTGTAGCATACTCCTGGTTGCCCGGGCGGCTCTGTATGGCCTGAATGCGCTCTAGGAGCATCATGCAATGAACCTGTGTGCCAACAGAGAGGCCAAAATCTCTCTTCCGGTTCAGTGTAAAGTCGCCCAGGAGTTTACACGCTGACCTGCACGCGCTCAGAGCACTGAGGTCAACATGCTGATCACCTTCAGCACCTTCAGCATCTCCAGCCAGCCCAAACTTCTCCAAAAGGGATTTAATAACAGGGTGTGGAGTCGCGGGGTTTTTCAACAGACCAACAAGCAGCCTGTGGCGGCACTGCGCCAGATCAGCCAGACTCACACAGCGATAACCGGAGAACGCGCGCGCCAGCAGCTGGTTCGTCTCGCGCACGCGGCTCTCTAAAGCGGCACGGACTGACGGGTTTGTGTGGAAGCGAGTGTGAAGATGTTCACAGTACTGTGCCCACTGAAATGCCCTGTCCACTGTCTCACCGtcccactcacacacaaagTCGGTCTGTGAAACCGCAAGCAGCTCCACAGTGCTCTCCAGGTTGTGCAGAACAGCCTCCATGCGGCGCACTGAAGCAGCTAAACCCGCATTCTGCCGCCTCCAGCTTCACACAGGACACGTGTGCGGAtccacaacacaaacacaaacacacacaacgcGTAAAAGGAGCTACGAGAGCAGAAACAGAACA

Function

symbol description
fancf Predicted to be involved in cellular response to DNA damage stimulus. Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Is expressed in brain; central nervous system; and lens. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group F; adenocarcinoma in situ; and granulosa cell tumor. Orthologous to human FANCF (FA complementation group F).

NR:

description
PREDICTED: Fanconi anemia group F protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176867 True 1312 lncRNA 0.52 1 15751159 15752470

Neighbor

gene id symbol gene type direction distance location
LOC113529473 gas2,LOC107728426 coding downstream 1435 15726943 ~ 15749724 (-)
ano3 ano3,LOC107677449,LOC107752468 coding downstream 41980 15652205 ~ 15709179 (-)
fibina LOC108275273 coding downstream 108639 15640341 ~ 15642520 (-)
spi1a LOC108275191,LOC108442687 coding downstream 123704 15620299 ~ 15627455 (-)
slc2a13b slc2a13 coding downstream 173945 15567829 ~ 15577214 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding upstream 7156 15759626 ~ 15769464 (-)
LOC113529694 LOC108274566 coding upstream 17226 15769696 ~ 15771485 (-)
ano5a ano5,LOC107728425 coding upstream 19944 15772414 ~ 15802627 (-)
pkp3a LOC108275089 coding upstream 95668 15848138 ~ 15864702 (-)
ccdc33 ccdc33 coding upstream 151850 15904320 ~ 15936578 (-)
G149301 NA non-coding downstream 25258 15725251 ~ 15725901 (-)
G149057 NA non-coding downstream 373753 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 419727 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 613152 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 618662 15130776 ~ 15132497 (-)
G149312 NA non-coding upstream 5814 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 145420 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 149970 15902440 ~ 15902642 (-)
G149366 NA non-coding upstream 151222 15903692 ~ 15903902 (-)
LOC113529609 NA non-coding upstream 315959 16068429 ~ 16092930 (-)
LOC113529470 LOC108275326 other downstream 31584 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 522174 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 663099 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 938454 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1915404 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 228694 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 388649 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1300883 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2452181 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2550672 18303142 ~ 18305329 (-)

Expression


Co-expression Network