G149363 (cyp11a)


Basic Information

Item Value
gene id G149363
gene name cyp11a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15897890 ~ 15898161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176929
CCTGTAGATGGGCCCAAATGTGTTGAAGTTATGCACCATTATGTGATGGATGTTCTTGAATCCATCTAGTTTCCAGAAGGTGTAGAGGTTCCCCATGCTGTTCTTCCACATTCCAGGAATCTCACTGAAGGGCCTGACAGTGGAGCTGCTTGCTGGAAATAGTGTATCTCTTGCAACAGGCATGCTCCCGCTGTGGCAGGCTCTTACCTGGCCTGGTCCTTCCATTATGGCTAGAGATCGAGCCAAAGAACCGCTCCAAGCTGTGTACCTCA

Function

symbol description
cyp11a cholesterol monooxygenase (side-chain-cleaving)

NR:

description
PREDICTED: cytochrome P450 cholesterol side chain cleavage isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176929 True 272 lncRNA 0.50 1 15897890 15898161

Neighbor

gene id symbol gene type direction distance location
pkp3a LOC108275089 coding downstream 33188 15848138 ~ 15864702 (-)
ano5a ano5,LOC107728425 coding downstream 95263 15772414 ~ 15802627 (-)
LOC113529694 LOC108274566 coding downstream 126405 15769696 ~ 15771485 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding downstream 128426 15759626 ~ 15769464 (-)
LOC113529473 gas2,LOC107728426 coding downstream 148166 15726943 ~ 15749724 (-)
ccdc33 ccdc33 coding upstream 6159 15904320 ~ 15936578 (-)
sema7a sema7a coding upstream 99728 15997889 ~ 16005363 (-)
man2c1 man2c1,LOC107752311 coding upstream 116759 16014920 ~ 16024858 (-)
ca12 ca12 coding upstream 129994 16028155 ~ 16043852 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 223496 16121657 ~ 16140904 (-)
G149312 NA non-coding downstream 139389 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 145420 15751159 ~ 15752470 (-)
G149301 NA non-coding downstream 171989 15725251 ~ 15725901 (-)
G149057 NA non-coding downstream 520484 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 566458 15331207 ~ 15331432 (-)
G149364 NA non-coding upstream 4279 15902440 ~ 15902642 (-)
G149366 NA non-coding upstream 5531 15903692 ~ 15903902 (-)
LOC113529609 NA non-coding upstream 170268 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 194911 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 282745 16180906 ~ 16238108 (-)
LOC113529470 LOC108275326 other downstream 178315 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 668905 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 809830 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1085185 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 2062135 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 83003 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 242958 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1155192 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2306490 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2404981 18303142 ~ 18305329 (-)

Expression


Co-expression Network