G149366


Basic Information

Item Value
gene id G149366
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15903692 ~ 15903902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU176932
GCCattgttaataaaatgttatagaACAGACATGGATGAGGAAGAGCTGCATCTCTGTCTCTGCAATTCTGCGCCCAAGGCATTGACGAGGCCCAAAGCCGAAGCCCAAACTCCTGAAGTAGTGGCTCTCATTCCTCAGCCAGCGAGAGGGCAGATACTGCTCTGGTCGGGGGAAGATGCGATAGTCTCTGCCCATGGCATACAGTCCCAG

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176932 True 211 lncRNA 0.52 1 15903692 15903902

Neighbor

gene id symbol gene type direction distance location
pkp3a LOC108275089 coding downstream 38990 15848138 ~ 15864702 (-)
ano5a ano5,LOC107728425 coding downstream 101065 15772414 ~ 15802627 (-)
LOC113529694 LOC108274566 coding downstream 132207 15769696 ~ 15771485 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding downstream 134228 15759626 ~ 15769464 (-)
LOC113529473 gas2,LOC107728426 coding downstream 153968 15726943 ~ 15749724 (-)
ccdc33 ccdc33 coding upstream 418 15904320 ~ 15936578 (-)
sema7a sema7a coding upstream 93987 15997889 ~ 16005363 (-)
man2c1 man2c1,LOC107752311 coding upstream 111018 16014920 ~ 16024858 (-)
ca12 ca12 coding upstream 124253 16028155 ~ 16043852 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 217755 16121657 ~ 16140904 (-)
G149364 NA non-coding downstream 1050 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 5531 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 145191 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 151222 15751159 ~ 15752470 (-)
G149301 NA non-coding downstream 177791 15725251 ~ 15725901 (-)
LOC113529609 NA non-coding upstream 164527 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 189170 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 277004 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 326712 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 345259 16249161 ~ 16251085 (-)
LOC113529470 LOC108275326 other downstream 184117 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 674707 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 815632 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1090987 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 2067937 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 77262 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 237217 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1149451 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2300749 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2399240 18303142 ~ 18305329 (-)

Expression


Co-expression Network