G149427


Basic Information

Item Value
gene id G149427
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16024844 ~ 16026512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177010
CCTGGAGAGGCCCTTTTCTCGTTTTGTTTTCTCGCGCACAATGTAGTAAGACACGCGCGGTTTAGGTTATTATGTGGCTACGGGACACTGATACTCCATTCCGAAGTGACGAACTCTAAGggtcacaccAAGCCTGTAGCCTATCctaggggacttggggcacaagcaggggacaccctggacacagtgccaacccatcacagggtacAATTGCCCACCCACTCGGGACAAtttgccaatcagcctacaacgcatgccTTTggactgtgggaggaaaccggagtacaaggcaaacgtgctaaccactaagccactgtgcccccaatatgtattattattattattattataaaataccaCTTTTTACACACATCTGGCACAGTAATCTTGGACATTGCATCATTTTGGTTTCCCAGAGGaggttattttaaattatatataccTCTGCTACTTTGTAAACCTTTGTAAACCTTGTGGGTCTGAGAAAATCACTATAATTTTAGAAAGGATTATGACAAATTTTACTCATGtttcaaacatttacatttctttgtcatcattttcattttggcaGTTCCTGTAGTTGGTATAAGTTTCTTACCCTCTCAGTTTCTACATAAAACAGGTGATAGAATGGCGGTTGCCCTATTACCAGCTCAACAACTTCATCCCTTTAAAAGTCAAGGACATCAGAAGTACATTATATCAAACACAACAGTATACTTTAAGTTGGCAGACTGCCACCAGTGATGTCCTTGAGAGCAGGACAGCTTTTCATTAGTCTAA

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0008033 tRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177010 True 786 lncRNA 0.42 2 16024844 16026512

Neighbor

gene id symbol gene type direction distance location
neil1 neil1 coding upstream 10689 16009837 ~ 16014155 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding upstream 16021 16005670 ~ 16008823 (+)
stra6 stra6 coding upstream 44599 15968543 ~ 15980245 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding upstream 119515 15897676 ~ 15905329 (+)
stoml1 stoml1 coding upstream 129390 15891653 ~ 15895454 (+)
trnav-aac_18 NA coding downstream 14663 16041175 ~ 16041247 (+)
si:dkeyp-73b11.8 NA coding downstream 19063 16045575 ~ 16048154 (+)
usp3 usp3,LOC107659494 coding downstream 22572 16049084 ~ 16060168 (+)
fbxl22 fbxl22 coding downstream 34576 16061088 ~ 16066983 (+)
LOC113529940 LOC108275177 coding downstream 66560 16093072 ~ 16106147 (+)
G149276 NA non-coding upstream 206476 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 269932 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 312927 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 455357 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 540941 15483074 ~ 15483903 (+)
G149428 NA non-coding downstream 1095 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 228172 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 301744 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 312078 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 413194 16439706 ~ 16440054 (+)
LOC113529564 ano9,LOC108442698 other upstream 202253 15807990 ~ 15822591 (+)
svip svip other upstream 299753 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 372160 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2195513 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2247973 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1807725 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2156042 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2648498 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2695083 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2721315 18747827 ~ 18796259 (+)

Expression


Co-expression Network