G149495


Basic Information

Item Value
gene id G149495
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16093072 ~ 16095175 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177091
ataagacaaaaacaggaCATATTAATCCAGATTCTGCACTTTCCTTCaaaaacagtgaataaaaaagagactgcagaaaacatgttttagtttctttatacattttatttaaaaccgGAAACATAACCTAGGAATCATGCACAATACTCCAATACTCTCTCCAACTTCTTGCTCTATAGTATTAGAATTGGGTCATGTGCAACTTTTATCTTATCACTTGGATATGtctagcctttctttttttttttaaactgattatGACTAGATCAGTGAGCACATGCTGTCGAATAATAAAGTGCACATTATGTAACCGAGCGCCAGAGACACAGCAGTAAAACGCCTCTGAAAGGAGATGAATTACTAATGGCTCCATTTCCATCTAGTGAATTTTGTTCAACTTTCAAACGTTTCAAAGCAGGAAAGTGGCGCACCACAGCCTAGAACCCCACAAAGCCCAGCCTTGGCAGTGCTATTACCAACAACCAGGACAAATAAATCCTTTCCAACATCACCTCAACATAACGGCATCGAAAACACTCGGGGAAAGTTCAGATTATAAACCTCAGATTACATCCAGCACAGCTATACTATTAAACAGTAGCCGCATGCTATACTATTAAACAGTAGCCTGTGTCAGAATAGTGCTCCACTAGTTTCATAGTGTTTAGTAAAGCCTGCGATGTAGGACGTGGCCACGGCAGTCAAAGATCATCCAAGGTGATGAAACGTGTTTAAAGCAAAGACAATTAAACGAAACCGCGAGAAGTATCCAGCATCAATAGCTTATTACCTGTAGGATTAAAGAGGGTGGGGCACTGGAGACAACACCTCACCTTAACGCAGCCTCGGCTCACTAACTCCCCAGACAGCATGTGATTCCAGGCTGCGTGTCAATCCCACATTACAGAAACATGTGTAGAAAATGCATCTGGGTTTGTTTTTAGTCTAGAGTTCCGCATTCCTTACAAGCCCAGAGTAAATATGTGCTCATATTCGagctttcagaaagaaaaagaaagacgcCATGTTTTGGTCTACAGAGTTATCAGAAGGGGCTGTGTAAGCTGGAAGACACTTCACATCTGTAAAACGCATGCAGGAGTGTGAACAACAATCAGCGCCAGGTTCACTGCATAGCTCCAGGCAACTCCTCTAAACTCCTCTCTTCACATCTCTTCACTTACAGCATTGTGTACATTCATGCGCTAAATATCTGCTTTCCAGAGTCACTGCAAATGTCAAAGgaggtttgttttattattatgaacGCTGTCGTACCTTTTTGAGGATATCAGGGAATGGTGCGCTTTCCTTTGTTTCAGAGGTAAATCCAGGACACGGCGAGCAGCGAGTCGCTGAGCTTCGTGCTTTTCCGTGATGCGGAGCTGCGACTGAGAGGCCCGTGTTACTGCTCCCCAGGCAACGTGTCTGCGGGGGCGGGCACAAACACGCCGGGCTCTCCCATTCGCGTCTCCACAGCCCGAGCTGACCAATAAGGTTCGTGTGTAGAGGCGGCCGTGGGCGATAGGCGAGTCGAGCTTCCATATGCAAATGACATGGAAATACAGAAAGCACGTGGACACGCGGATCAGTTTCACTCCAGCAACAGCCGGACGGACTGTCAACTCGGCGGCTCTGTTTTTGCTCCCAGTGGCAAACTTATTCACGCCTCATTAGATCAGTGAGGCTGATGCGAATGGCCTCTGAGAGAGAGCAGCTATCCGATCGCCATATTCAAACACAGCATAATCCGTCCATTCAACGACATCCACAACAAAATAGAAGGTTTACAAATGCATTAGTGTTCGCTATGAAAACAGTACACTGTGTCCTAGAGCACTGTTTCACGGGAATTACATTCTGATGCGTGTAGATTTGTTCGTTTCCAAGCCGCAAATAAACAGTCTATTACAAACTGACcgcaaatatttacatgaagaACCACAGCAAGACTTTCCCCGGTGATGTGTTTTGGCCACGCCCTCCACTTCCGCCTCCCCTTACCTGCACGTGCGATGCTGCTCGTAAACCGGACGAATTAACGTTAATGATTTTAGcagtgaaggaatgaatgaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177091 True 2078 lncRNA 0.45 2 16093072 16095175

Neighbor

gene id symbol gene type direction distance location
ca12 ca12 coding downstream 49220 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 68214 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 87709 15997889 ~ 16005363 (-)
ccdc33 ccdc33 coding downstream 156494 15904320 ~ 15936578 (-)
pkp3a LOC108275089 coding downstream 228370 15848138 ~ 15864702 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 26482 16121657 ~ 16140904 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 46421 16141596 ~ 16165999 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 85742 16180917 ~ 16199115 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 140968 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 156169 16251344 ~ 16254496 (-)
LOC113529609 NA non-coding downstream 142 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 189170 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 190430 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 194911 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 334571 15758284 ~ 15758501 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 85731 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 135439 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 153986 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 159472 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 214715 16309890 ~ 16317926 (-)
islr2 islr2,LOC107662462 other downstream 100978 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 373497 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 864087 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1005012 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1280367 14810004 ~ 14812705 (-)
acsbg1 acsbg1 other upstream 45944 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 958178 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2109476 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2207967 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2209463 18304638 ~ 18304801 (-)

Expression


Co-expression Network