G149552


Basic Information

Item Value
gene id G149552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16254684 ~ 16255314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177169
cagccattttttacagagttcctccattttctcaggctcaaaagtaatgggacaaactaatataatcataaatattaggattatttttattacttggaggtaaatcctttacagtcaatgactacctgaagtctggaccccatggacatcaccaaatgctgagtttcctcccttgagatgatttgccaggtctttactgcagccatcttcagttgctgcttgtttgtgggtcattctgccttcagatttgtcttcagtaagtgaaaagcagctcagttgggttgaggtcaggtgactgactcgaccatttaagaacatttatttttcaagctcttgggctgctttcacagtatgttttgggttgttatccatccatctgtcctatcagttttgcagcatttgactgaatctgagcagaaagtatagctctgtacacttccgaattcatcctgctacttctatcaacagtcacattatcaataaaccccagtgacccagttccattggcagccaaacatgcccatgccataacactgcctccacatgtttgacggatgatgtggtatgctttggatcatgagcccttcctttccttctccatacttttctcttcccatcattctggtacaag

Function

NR:

description
PREDICTED: SLAM family member 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177169 True 631 lncRNA 0.42 1 16254684 16255314

Neighbor

gene id symbol gene type direction distance location
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 3609 16242248 ~ 16251075 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 19303 16231335 ~ 16235381 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 35050 16209778 ~ 16219634 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 48234 16202775 ~ 16206450 (+)
si:ch211-112g6.4 sh2d7 coding upstream 79850 16170244 ~ 16174834 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 41279 16296593 ~ 16311059 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 145528 16400842 ~ 16421690 (+)
gcnt3 NA coding downstream 167309 16422623 ~ 16424388 (+)
foxb1a foxb1,LOC103353681 coding downstream 243210 16498524 ~ 16500108 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 640396 16895710 ~ 17011850 (+)
G149428 NA non-coding upstream 226665 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 228172 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 436316 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 499772 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 542767 15711013 ~ 15711917 (+)
G149574 NA non-coding downstream 72942 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 83276 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 184392 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 190725 16446039 ~ 16449140 (+)
LOC117597920 NA non-coding downstream 205066 16460380 ~ 16474228 (+)
LOC113529564 ano9,LOC108442698 other upstream 432093 15807990 ~ 15822591 (+)
svip svip other upstream 529593 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 602000 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2425353 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2477813 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1578923 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1927240 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2419696 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2466281 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2492513 18747827 ~ 18796259 (+)

Expression


Co-expression Network