G149631 (rps27l,zgc:136826,LOC107598918,LOC107752326)


Basic Information

Item Value
gene id G149631
gene name rps27l,zgc:136826,LOC107598918,LOC107752326
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16180906 ~ 16238108 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177252
AGCGCATGGCAACCGCAGGACTGCTTCACTTCAGGAATCAGACACTGAGCTGTGTACGTCGGAGAAAAGCGACTGCTAGAGAAAATGCCTtTGGCTAAAGACTTACTAAACCCGACTCTCGACTTTGAGAGGAGGCAACATAAGAAGAAGAGACTGGTCCAGAGTCCAAACTCTTACTTCATGGATGTGAAATGCCCAGGTTGCTATAAAATCACAACAGTGTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCCACAGTGCTCTGCCAGCCCACAGGAGGAAAGGCCAGGCTAACTGAGgGTTGTTCGTTCCGAAGAAAGCACTGAAGAGAATAATTAAATTGGATCTtttgaataaaaagaatatGTTCCAATTTCCTTATTTTTTCATTGATTGCAATGAGTGAAATGCCCCTACAGTGATTATTATGTGGAAGATTATATCTACTGTATCGCTTTTCTGAATAAAGCCTGAGCAGAGCATCaaaaaaaaaaaaaaaaagtttagtgtttagtttagttttactGTCTTGGCATGTAACCAAGGGAAACAGAAGTGTAAAACAATGTAGAATTTTAGGAATCCTAAGTCTGTCTCTATAAAGTAGAGAGTCTCTATCATTAATCACTGGCACATATACCTTTGTCAATGTGGACCTCAAGAATCTTCTTTTTGCGCTCCACTTTGTGCCCATTGCAGTTCTTGCATCGGTCCTTGGCACTGAACCTCTCGCCTTGCCCCTGGCATTCTGAGCACATGCTCTGAATCTGCTGAATCATTCCTGGTCCAATCTGTTGTACCTGGATTTGAACTCCTCTACCTTTGCAATTAGAGCATTTCTCAAGGGCCCCTTTCTTTCCTCCATAA
>TU177253
AGCGCATGGCAACCGCAGGACTGCTTCACTTCAGGAATCAGACACTGAGCTGTGTACGTCGGAGAAAAGCGACTGCTAGAGAAAATGCCTtTGGCTAAAGACTTACTAAACCCGACTCTCGACTTTGAGAGGAGGCAACATAAGAAGAAGAGACTGGTCCAGAGTCCAAACTCTTACTTCATGGATGTGAAATGCCCAGGTTGCTATAAAATCACAACAGTGTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCCACAGTGCTCTGCCAGCCCACAGGAGGAAAGGCCAGGCTAACTGAGgGTTGTTCGTTCCGAAGAAAGCACTGAAGAGAATAATTAAATTGGATCTtttgaataaaaagaatatGTTCCAATTTCCTTATTTTTTCATTGATTGCAATGAGTGAAATGCCCCTACAGTGATTATTATGTGGAAGATTATATCTACTGTATCGCTTTTCTGAATAAAGCCTGAGCAGAGCATCTCTTTTAGAGTCGATTCTTTATTTAATCCCAACTGGCTGTTAAAGCTCAATTAAAGCAGGTTGCAGCCATTACTTTCTTCTGTTGTAACTTTTGCTTCTAAGATGTTTAAACATGTCTTGAGCTAAGCACAACTGGCctcattttgtacatttaaataggacataggatttatatatatacacatacacacacatacacacacacatacatacacacaggcttTGAGgctaataaacataaaatttacTTGTTTaacaaacattcactgataTAAAGTATTTTGTGAGTTTtactgaaggagtctccagtgtcagcactttgtaacaggtAAAGCTAGTCCTGTGAGTTTTCCGATGTTGTgctttaacatgacaagctgcattttttgtcttcttaacttcaagatagagaaaagagagagactgttgagggaaagactgttatAGCTGCTAGCAAAGTGCTTTAGCTGATTAAGGTCTGCCTGAAATGTCCTATTTCTTTGTGTACTATGCTTAACTTTTCATCAACAATTCTTACTCTTGAACAGTCCAGTTGGAGAAAGAATCCATGTCACCAATCTAATTAGAACATGGTCAGAGAGGTTATATGCAtgacaaaccaaaccaaaaacaatCTGCATAGATACAAAGTGGtgtacatacaatatataagCACTTGCATATATGATGCAACATATGTGTTTGGGGTTTTGTGCCATTTGTTTCACCCTTGTAGgaaagacaaaataaagcacagagaattacatgacatgttttatttgagaaaacacatttttcattgaTACACAGGTGAATTGTGAGGGGTGTTACCTTCATAGAAAGCATACAGATACCCTTCTTCTGTATTGAGCTTTTTCATGTGGGTGagacaaaagaaaagcaaattacagttagaaataaataagaggGCTCATATAAAAGTGAACAGAatgcacacacccacaaacacattcaaaagGTACATGCTACTGTAAGTAgtacaattaaacaaacaagcaaacaaaaaaagacttcTTGGGCAAATCAAGCAACATACTGATTATACAGTAATTTTCCACCATGTCGGATTGCATGAATACACATCAATAGTGATCCTCGGAGGTGTTTTACCATTAAAGTCAGCACCTGTCCTTTCCACTTAAACAGGTTTCAACAGAAGGGAAATCTCTAGGtgaataaagcactttgagagCACTTGTTTTTTAGTTTTGATCCAATTAAATTACATCTTGATCACAAACTACCCAATGAAAGGTCAAATTGGGAGTGCACTCACAAATTTGACAATTCTGATATCAGATTTACACAGAAAAAGGTGCTGCATTAATAGATGCACTGAATAGGAGTTTCACTGAGTCTGACACTGTACTCCATGGCTTCTGGGACCCTCATCTTCTTCATATGCTTCTCCACTGTACCTCCTCCGCTGGAAATCATGGTCCACCTCACAGAGGTCAACCTCTTCCATATCATCAGTCAGCATGACCTCATCTCGCTTGGGAAGCAGTCTCTCTAGCTGGGAAAACATGTTCTCTGGAAGCCAGTGTTTCTCTGGGAACTCAACCTGGAGTGGAATACACAGTgttttcaggtttaaaaaaaaaaataaaatcctggtCTAAGCAATTTCAAgatagagaaaagagagagactgagaatgaGGGCTAAAAGCACAGCACTGGCATCACAGTCAAAAAAGACAGTCTTATCTTTTATACAGCTATGCAATCTTTCTCCATGAAATGCATGAGTTGCATTCATTTTGCCCTCTGCTATAAATTGCTTTTGCTGTATCTGATTCTCTTAGTTGTCTTACTGCTTATAGGACTGGAGCATGACGACAATCATATCAAACTGTTCTCCAGTTGTACCAAGGGCTCTGTCATCTTTTCTTACATTCAGCCATTCAGaaactatacatttttattgtgcTCTTACATTCTCGTTTTGCTGTTTGAACCTGATGTGTGTTAGCGCCACCTCTTAATCTCTTAATGTCAACCCTTTTTTCAATGTAATAGAGGGCATTTGACTTAACTTTGAATAAAACGTTTTCTGCTGTTTGTTGActg

Function

symbol description
rps27l Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS27L (ribosomal protein S27 like).

NR:

description
PREDICTED: 40S ribosomal protein S27-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177252 False 877 lncRNA 0.42 5 16233429 16238108
TU177253 True 2587 lncRNA 0.38 5 16180906 16238108

Neighbor

gene id symbol gene type direction distance location
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 14907 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 40002 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 137054 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 156048 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 175543 15997889 ~ 16005363 (-)
LOC113530180 LOC108274564 coding upstream 13236 16251344 ~ 16254496 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 18402 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 27454 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 87834 16325942 ~ 16362375 (-)
bnip2 bnip2 coding upstream 205347 16443455 ~ 16458395 (-)
G149495 NA non-coding downstream 85731 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 87976 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 277004 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 278264 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 282745 15897890 ~ 15898161 (-)
G149643 NA non-coding upstream 11053 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 16539 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 71782 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 184558 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 222683 16460791 ~ 16461045 (-)
islr2 islr2,LOC107662462 other downstream 188812 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 461331 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 951921 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1092846 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1368201 14810004 ~ 14812705 (-)
LOC113529460 nrg4 other upstream 815245 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1966543 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2065034 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2066530 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2115866 18353974 ~ 18364036 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03651998_03657102 DNAJA4 coding CI01000330 null 3651862 ~ 3658416 (-)