G149718


Basic Information

Item Value
gene id G149718
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16422666 ~ 16424604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177366
TACAGTGTGTTGTCTTTATTCTTTTAACAAATAGAGAATTAGCACTTACATAATGTCTCtggcaaaatgcaaaaaagaacCTTATtttgaaagagtgaaagagattttgtttataaagcacatttaatacaacaaaagctgaccaaagtgctgtgcatacacaaaataaaatgatatagaataaaatattaagagtacgtttgaaaaaaaagagaaaagaaaacccaccaaataaaacacagatagaacagacaaacacagattAAAAAGCCACCttataaaagtgtgttttgtgtcttgatttaaaaactgtaacaaAGGCTTACTATTAACTGCTTGCtaatatttttctcatttattgcCATGAGATTGagttcacatacacacatttctgaagTTTGTCTGCTTTGTTAAAATCTTTTAACTGTTAAAGCTAGTTTGAAGTATTACTGGCTTTGCTACATTAAAGTTCATGAACTTTGAACATTAGAATATTTCCTTAAATAAActctacatttaaatataaatattagtcatatatacagtgtgtcaAAATATACACAGTTGGTAGAATTATGTAAATacagtattatttaattatatttgctTTATCTATGTTAAGTAAAGACTGACCATAAATTGCTTTGTACCGTAAAAAAGCCTCTAAGCATTTTATAGCAATGTCATCCACTCCTGGGTCAAATTTGTTAGCAAAGAGATGTTTCTGCTTCAAAATCCAGTTCAGGTCCCCTgctccataaacacacactgcatgccTATATGACCCAGTGCATGGTGGATATGGTGCTCCATCCTTCATGTTTCCTTCATGGTAAATCCACTTGACCAACCTCGCAATTGCCACCATGTCCGACTcatcatatttttcattgtGTGGGTTGGAGCCAGGCACTGAATGCATCCTCTGTAGTGTTGCCCACATGTGCTCATCTGGGCTGTACGTGTCCTTCTCCCATTCCATGAAGTTCTGGATTTCCGGACTCTCAAAGATATGTTCTACAAACTCTCTAGTAACAACAAAGTATGCATTCCCAGAGAACATAGGGATGTCAATGGGTGGCGGTGTCTTCCTAATGCCTGTCCGAGTCACAGTGGTTGTGACGTTATGATGGTACTCCCAGCGGGCTTTTTTGTGTGAGCTTGTGACTTCTGACTCCATACTGTTCTTTCCATTGAGATTTTTCAGAGAACGAACAAGCTCTGCATTGGTTTTTAAGGGAAAATCTGCCCCACATGTGTTGAGCAGATACCTCCACCTGACAGGAGACTTGAGAAGGTCCTCCATGCAGTTGATGTCTGCTTGAACTCGTGACCAGGAGGCATAGATGACACCCTCTAACTTACTGGCCACAAACACATTGGGCAAACAAGACACAATAGCCCGTACCGCCTCAAAAAAGATCTTAGGTGACTTCTTGTCCACATGAACACAGTAGACATTCTGAGGAGTGTAAATAGCACGCAGGAGCCTCTCAAACATCTCAATCTTCTCATGGATAACTATGGAGTAAGCAATTGGGAAGTCTCTTTCCTCCTTGCTCAGAGGAACTGTTAGAAACCCTCTATCTCTGACAAAAAATTGGCAGTCCTTTGTGGCATTTATGTAGAAGGActcagaaaaaagagaagtttTTACCCGCTGAGAAAGGAGTTTGCTGAAGTATTTGCTCTCAACTCCATTCATGTCTCCTTGGATAATGGCTGAACAAGCTTGCAGTTCTCCAACATCATGCTTTATCAGGTGTTCCATGTCCACCCGCTCGCTCTGTAAGCAGCCTTTTCTTGTAGAGTTCATTACAAGGTAAATAAGTGAAAAgctaagaaaaaataaagagatatatctcaaaaacagttttttcttaAAAGCCATTTCTTAGGTGAAATTGCTGCATGTATCAGAAGTCAAACTCAGCTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177366 True 1939 lncRNA 0.38 1 16422666 16424604

Neighbor

gene id symbol gene type direction distance location
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 60291 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 154680 16265562 ~ 16267986 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding downstream 159727 16256510 ~ 16262939 (-)
LOC113530180 LOC108274564 coding downstream 168170 16251344 ~ 16254496 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding downstream 184509 16236143 ~ 16238157 (-)
bnip2 bnip2 coding upstream 18851 16443455 ~ 16458395 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 116248 16540852 ~ 16546270 (-)
ice2 ice2 coding upstream 122721 16547325 ~ 16566002 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding upstream 142691 16567295 ~ 16800368 (-)
LOC113530224 NA coding upstream 328572 16753176 ~ 16753281 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 104740 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 167180 16254647 ~ 16255486 (-)
G149643 NA non-coding downstream 171581 16249161 ~ 16251085 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding downstream 184558 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding downstream 190857 16230614 ~ 16231809 (-)
G149836 NA non-coding upstream 36187 16460791 ~ 16461045 (-)
G149841 NA non-coding upstream 71567 16496171 ~ 16498461 (-)
G149854 NA non-coding upstream 188380 16612984 ~ 16614416 (-)
G150089 NA non-coding upstream 594352 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 603513 17028117 ~ 17052512 (-)
acsbg1 acsbg1 other downstream 194332 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 430572 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 703091 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1193681 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1334606 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 628749 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1780047 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1878538 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1880034 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1929370 18353974 ~ 18364036 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G74368 NA non-coding NC_035904.1 CM008307.1 16797045 ~ 16801051 (-)