G149729


Basic Information

Item Value
gene id G149729
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16540599 ~ 16573872 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177389
GAGAAAATGTGTCAATAATATTGGAGATCAAATACTTTTggactatttatttaaaaaaagttgctCCAAACAGCATAATGAAGCTTCAGCAGGCAGCAGATGGTTGGCATGAGGCTTAGAAGCAAAGCCCTGTGATGCTCTATTGCTCTCTAGTGGTGAAGTACACAAACTGCACTCCTTCTCCAAGAGCTTCAGGTCAGGATCTAAATACAGCAGTTACGTACCATAGAAAtacatacaaatgtttttttgttttttttttgttcacgaAAGTAACTTACCTAGCACCACACGTCAGtttaacacaaaattaaatgtcagCACGCCCTACCGCTATCAAACTAACTCTAAAAGAGAGAAGTATACTAAAAACAGAGATACTGTACAGCATGATGTAtccaataaacagataaatatttGCACTGAGTAGGTCTTAatagcagtatttttttttttttttttttacctatacAGACAGATGTTACAAAGTTACTTTTATACATGTGAtcaataataacattaaatatagtgaattaaaagcgGAAAGctgagggggagagagaaagagagggaaatcAAGCTGTACAGTTTACAGGCCATATGAAGTTCTTAGTTCTCCACCTGGGAACAGAACTAGTcaaatatacaaacaaaacaaaacaaaaaaataatcagagagagcgagagagagagagagagagagaaaagaaacaacaaaacatgaTAAATAAGAGGTGTATTTACATGCAGGTGTCCAAAGCCTATGCACaaagatgaataataataataataataataataataataccatatATATTATTGCTTGACATTCGATTATGgctaaagtttttttgtttgtcttttttttgtcttttgctctATATTCTAAAACATATCTCACTTTATTAGCTGTGCTTTCGGGATAAAAggtcacattttaaaaaaaatgcaatgaaaaTGATTGGTAATCTCTACATCTTAATAACACTTTCACCTTCAAATCAAAATGGCGTCACAAGCATGACATCACACATTAATTCCACGTATTAGAACATgttgaatattattaaaatggCTTCTGGCAGTCTAGGTGTCGTCACTAAGAAAGAATGACGGAGTTATTACGATGGAACAGTGTAAACTCGTTCTGTGGTATTTGTGACTGCATAGGCCCGTCAGTGGCAGATTTGCATAATGTAGGTGTGAaggattttaataaaataatggcgTGCACTGTGTCATGCTTGTCCAGCCTAATGGATGAGTTCAAACTTGCTACTAAAAGTGTGTAAAACCTGGGAAAACTAAGATATCCATATACCATTTACTTCACCAGCTGACCCTGCTGCTCCTTATCTACTTTATTAAAGCCTTGTCTGGGGTTTGacttacacaccacacacactatacacaccactcacagacacacactcatattgCTTCTTACAAAATTAACAAAGAGGGTAGAAAGATCTCAAGAgactgtttcacacacacaatacaacacacaatatGGAAACTTCTGATGCGCAACTCTTTCACAAGTGAGAGTATTTATATGTACATCGACACGTCAATACCACAGATCCAGAGATGGTTCAGTACTTTtgattgaaaaaataaatttgtccaAAGTTTCTACTTTACAGCCTGTATTGCTTTTAATACCTAAAACAAACTACACTGACAAAAAAAtcagtacagtttttttttatggtgcAAACGGGTATCGTTGTAATTAGCATTAACTAGGACACCACGATATGGATCAAGTAGACTGAAAAGAACAGAATTACAACAGTCTTCTGTGTATCAAAGCTTGTTCAGAGGGAACTCCACAGCAGTGGCTACCCTGTCGAAACCCGTATTAGTAACACACTACGCACTCCTGGCTCATGGGCAGAGTCTGCTAGCGGAGCTAATTGTACAAGAGGTATTTGGCACATAGATTCATACAATATGTGTGAAAGTTACACTAAAAGGGGTGACATTATAGCTCATTGCTTGTTTTTGTATGATGTTGGACCCTGTTGGTAGCATAATGTGAGTGCACTGAACCGTATTGATCTGTTGTTTTAGGCATTTCTGAGACCTGATGAGATGTGTAGGATTTGTTACAGGTGCACAAAGTGAACATGAGATGATGACTCTTACTAACCAGAGAAgtacttctttttaaaaaaaacgacAGAAAATGTTATGTTGCTACGTTACAGAAATGGTCTGCCCCAGTACTTTTAGTAAAATGTTCTCCCTGAGCATTTGGTATTTAAGTCCACGCACTGCCAATTTCAAATGTTCCGCTGGATTGTCATTCACAGATTTGATGAAAGTTTCTGTGTAATTTCAAAGTCGCTGGCCAAGAACAATCAAATAAATACACTGCAGATGCACTGAGTCAAAGTTACATGATTACTGAAACACATTCTCTATGGTAATAAATGTCAGATCTAATTTTAGTGTGTTATACTGTAATTGCATTTAATGAGCCATGCTGACCCTGTTAACATAACTATGGTATATATTGAGAATGTAGGTACAGGAAATAATGGAGGGCAGGACCAATCATCTCATAAAAATCAATGTTAACTGAGTCAAACAGAGTTAGAAGTACAACTCTTCCCTGAGGAAAATACATAGTATATTGTGTAAGGAGCATGATGAGAAGGTGGGGGGGAATAGAAGTGCCTACAGAATTACTAACAACTAGCAGAAATGGTTGTTCATGGGATATCAGCGTGGTGTTTCTGTATCATGTGTGCATTTTATAATAGTCACATTATAATTTCACTGGAATGTTCTGTGGACTCAACATTAGGAGAAACTGCTATGGCACGCTTGAAGGGCTTAGACTCAACAATTAGACACAACAATTACGcattcaggggaaaaaaaaagcactaacaCTACTATTCTTTCTGACTAAAAGACACAAAAATCGAATTATTGCAGGAATAAGTGCTTTATaatctcactttctttctctccctctccttctttcATCAGCTTATGCATTGTACATATTAGAAAAATAGAAGTTTTACTACCAGACAAGGCTTTGAATATTTTTCTGATTCTTTAACTGTCTCCTTATTACCGGTACAGCTGGGCAAAGGCTGTTACAGAGAGGCTGTTTGAGAACGAAAGCCTCGCTCAAACTCAAATCTCTGTTCTACAAAAGCAGATGGGGCAGAATTAACCAGGGAAGTCTGCACGCTgtatcattaataaatgaatgctcAAGCCATATGTGAAATACTGAGAGATGCTGTGGGATCTTCACCACTAGATGGAACCATTGACTAGCTCCTAACATGCACTGCACAATGAAAATTTATTACTCTAAACCCCAGCGCCTGCTTTCCACACACTTTAATGGCAATGATTTAACTATTGTGCTTTACGTTTGTGCTGAAAATGGGCATTACACCTAAGAGAAAATCAAGCTTGCTAACAAGTCATACGGTTACACCGGTTTTAGACAAGGTGAGACGTGGATTGGCAGTGTTGTAGAACatgctgatctgggatcaggTTCAGCCTTGCACACACTTCTCATTCTGTAAAGCGCTAAAACTGATCTGAGCCGAAAACCCCGATGCAACTCTATACACCTCTCTGTCAGCCTTTACCCAGCATTGATCTTATCCTTACACACTtgctcgctcacacacacacacacacatctgtaggAGCTTCCAACATGTAGCCTCTGTGAGTCGGTGGTTTTTCGCTTGTATTTCTGTTTGCACATGCAACACATCACTAGGTAAATATACAAGTCTTAAATTAAAGAAAGGTGCAAATAAAAGTGCCTTATCAATTTTGACAATTAAGAATAGTCTAGCTACTAATATTAtacatgttatttaaaatagattctataaacattacttttcttttctgtatagTAAGTACTTATGACCGTATACCCTGTAGCACATTAGAAAACAGGTGGAATGGACCCTTGCGTTGTGGCGGTGTGCTCAGTTAAACTGCCATAATCTGTCCAGAAAAAGGATTTAATAGCAGATGGCCTTATATGATCTCACTAAGCAACCACGGTGGATGAAGTGCTCGACAGCTAAAagtaattgcattttttttaaaaactagaaTTACCAGAATTCtacttattttttcttctttcttctcttttttttaacgaTTGTCCTTAGAAAGGCGTCAGTTTCGTGTCACCCCATGCAGACGGCTCCGTTCCACGTGCCccatgctttctctttctcgccttctctctccctttcacCGTCTCTCTCCTCATCTGGCTCTCCTCTTTTGACCTCTTTTATTGCTGGTTTACATTCTGAGCAGCAGCTTCCCagcaaaagacagaaagagtaGAGAGGGGCCTAACCTAGCACATGCCTACTATTACACGGAGGGTGTAATAAGTAATGACTCACTGATTtcttataattataatcattgtttaaaaaaattagatcCAAATTAATGGCTGCGTTCTTTGAAGAATTTAAAGGTTTGATACAATAGGACGGAAACACCATTTCTGGTGATCATTTAGAAATTATCGAGGGACCATTCTGGAATCGTATGCATGAGTGCTTCAGGTTGAgccaggaaaagagagagagagagagagagagagagaaagagagagagagagagagagagagaaaacaagcatCTTCATCTCCTCATCCTTTCCCCTGGGCCTTCCCAATCCCACTTGTGTCAAAAAAGGAGGGGATAAACCTCACAAAATCAACCCTCCAAATAAAAGTCATCTTGCTGTACCCCCCTCCcgaaggaaaacaacaacaacaaccacaaaaaaaaagaaagtgtgtgcaGCAGGTTAGCTgtcctgttttgtgtttgtgtatgtgtttgtgtatgtgtgtatgtgcagggCACTGGTAAAGTGTCTCAGATTCATGCTCGACATTCCCCACGGCGTTTGTGGCCCCTCAGAGCGGGGCGGACGAAGGGGCTGCTACCCGTCCACAGGCATGGACTGCTCAAAGTCTGATCCAAAGAGCTCCTTGTATAAGGGCGGGAAGTGGGTACGCACAATGTCCGGGTATATTGCTTTGAAAGCGGTCAGCTTCTCTGTATGCCTGCTGCACAGCGCTCGCAGGGTTGACACTTTGCATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177389 True 5140 lncRNA 0.39 2 16540599 16573872

Neighbor

gene id symbol gene type direction distance location
foxb1a foxb1,LOC103353681 coding upstream 40491 16498524 ~ 16500108 (+)
gcnt3 NA coding upstream 116211 16422623 ~ 16424388 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding upstream 118909 16400842 ~ 16421690 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding upstream 229540 16296593 ~ 16311059 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 289524 16242248 ~ 16251075 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 321838 16895710 ~ 17011850 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding downstream 454205 17028077 ~ 17042478 (+)
lactb lactb coding downstream 472129 17046001 ~ 17052211 (+)
tmem266 tmem266 coding downstream 488066 17061938 ~ 17113603 (+)
isl2a isl2,isl2a,LOC107589357,LOC107662481,LOC107712508 coding downstream 556985 17130857 ~ 17136035 (+)
LOC117597920 NA non-coding upstream 66371 16460380 ~ 16474228 (+)
G149723 NA non-coding upstream 91459 16446039 ~ 16449140 (+)
G149722 NA non-coding upstream 100545 16439706 ~ 16440054 (+)
LOC117597940 NA non-coding upstream 198636 16338590 ~ 16341963 (+)
G149574 NA non-coding upstream 212060 16328256 ~ 16328539 (+)
G150148 NA non-coding downstream 662769 17236641 ~ 17236946 (+)
G150152 sqrdl non-coding downstream 679795 17253667 ~ 17255337 (+)
G150261 LOC108275011 non-coding downstream 856271 17430143 ~ 17434377 (+)
G150265 NA non-coding downstream 872377 17446249 ~ 17446460 (+)
G150268 NA non-coding downstream 883048 17456920 ~ 17457135 (+)
LOC113529564 ano9,LOC108442698 other upstream 718008 15807990 ~ 15822591 (+)
svip svip other upstream 815508 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 887915 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2711268 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2763728 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1260365 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1608682 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2101138 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2147723 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2173955 18747827 ~ 18796259 (+)

Expression


Co-expression Network