G149841


Basic Information

Item Value
gene id G149841
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16496171 ~ 16498461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177511
CTGGTTTCATTTACACCTATTTACACGGACACCTTGGGCCAATAGGAATCATTTCCATTTGAAGACAGAGCAAAGGGGGTGAAAAGGCTCGGCAAACCGGAATTGAACCGCGATGGCACCCAGTAACAGTGTGTGAAGAAAAGGGCCAAAGGATTCCGATTTTCCAGGCTTTTCTTTCCGCAAGAAGTCTTCCAAGCAGCCCGGCGACGTCGATCAAACCCAAGCCTTTTGTGAAATAatagcctgtaagaatgcctttgacaaaagaagaacgtattgaaatcattgtcacggctggatcgggaagctgtcacatggactttaacaggaaacatggccagcacatcacacaccactctGTTGCCAAACTGAGAGCCAAAGTTGGGAGAGATCACTCCGTGTGTGTTAACAAAGacatggcaatcatgtagaggatgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177511 True 439 lncRNA 0.47 3 16496171 16498461

Neighbor

gene id symbol gene type direction distance location
bnip2 bnip2 coding downstream 37776 16443455 ~ 16458395 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 133796 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 228185 16265562 ~ 16267986 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding downstream 233232 16256510 ~ 16262939 (-)
LOC113530180 LOC108274564 coding downstream 241675 16251344 ~ 16254496 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 42391 16540852 ~ 16546270 (-)
ice2 ice2 coding upstream 48864 16547325 ~ 16566002 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding upstream 68834 16567295 ~ 16800368 (-)
LOC113530224 NA coding upstream 254715 16753176 ~ 16753281 (-)
c2cd4a LOC108275248,LOC108433606 coding upstream 389876 16888337 ~ 16890007 (-)
G149836 NA non-coding downstream 35126 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 71567 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 178245 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 240685 16254647 ~ 16255486 (-)
G149643 NA non-coding downstream 245086 16249161 ~ 16251085 (-)
G149854 NA non-coding upstream 114523 16612984 ~ 16614416 (-)
G150089 NA non-coding upstream 520495 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 529656 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 576785 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 626953 17125414 ~ 17150481 (-)
acsbg1 acsbg1 other downstream 267837 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 504077 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 776596 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1267186 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1408111 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 554892 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1706190 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1804681 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1806177 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1855513 18353974 ~ 18364036 (-)

Expression


Co-expression Network