G149854


Basic Information

Item Value
gene id G149854
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16612984 ~ 16614416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177528
GGAGTGCTGGATATTTGGTTCAGTGTGGTTTGACAACTGATAAGACCATCCTTAGGATAGGAGTTTCAGTGCCACATTGCAGAACGcattttgcatttacattttatacatagaGGCTACTCTCCTGCTACCCaggcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcgagagagagagagagcaagagaacgAGAGAGATGCCTGGGTTTAGACAGTTCTTGTGGAGAGAGAGTGGGGACTAGTGAGCTTTTTGCTCAGTATGCTGGATACATCATTGTGTAATCTTGCCTTATCAGGACCGGCTGCCTGCGCAGGCagaaatacatatacatatacacacctgAGCCCAATCTCTGAACATGTGCCTTCATTAGCTGGGCTAAATATCCCTGCTTTCCACAATCTCCATCATTTCTGGGCTTCAGTTGCCTGAATAATTACTTGCTCTCATTTCCCCTCCCTCTGGCCAGTAGGGAAGTGTCCTGCGTTGCATTAGTTTGCATGAAATATTTATCGGAGAAGTGCACATTTTCTCCTGCTGTCAGCTCCTTCCCAGCCTTGATGGACAGCCGTCTGGTTGCACCAGCTGCTATCACAGAGTTAACGGAAGAGTTGAGGCAGTTAAAGAGTTACGTTTATTTCAGAATTTTCAGTCTTTAATTGACAGTGATTAGGGCTTTGGATGCTTTGCAACGCCCTCACTGTTGTGCGTATGTTTGTTATCTTTGTATTTGAGAATTCGTGTGTTTGTATCAAGTCCATTTTCACTTTACCTTATGTTCTCACTAGCAAGCGATAAAGTGACAGACAGCCATTAATTTTCTATGGATGCGTGCAAAACGGAGCCAAAATTACAGAGGCAAGTGACAAAGTGATAGCACGGCAAGAGACAttaattgagattttctcaattctacgCAGATTAGGCAGGACATGGTAAtacaacaaatccaaacgactAGCTTGCATGACCAATCCTATGGAACGTGTGGTCCGACgattcttcagttccccactcgcAACTTTTCAGTTCCTACTTGCAGTTAGTTCCCTTTTACTGTTTAACACACAAAATTGGAAGAACaataactgtggtttcatcttaccCTGCTATAAATGACTTCTCCTTAAATGTGGCGAGACTGGAGATGGcacgataccactttttcttttatgatactgatactgaaactttgggatattttttctttaaaaatgaatttttttactgaaacccttaaaaatacaaaaattccGATTCCAATCTTTTCATTAATGTGCTCTTTACCAAATTTAAGGCCAGAGTAATtagtataataaatgtatacaaatCATGCAGCCTTTTTAAAGttggtgttgattactttctcGACAAACTTTATAACTCaatggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177528 True 1411 lncRNA 0.41 2 16612984 16614416

Neighbor

gene id symbol gene type direction distance location
ice2 ice2 coding downstream 46982 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 66714 16540852 ~ 16546270 (-)
bnip2 bnip2 coding downstream 154589 16443455 ~ 16458395 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 250609 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 344998 16265562 ~ 16267986 (-)
LOC113530224 NA coding upstream 138760 16753176 ~ 16753281 (-)
c2cd4a LOC108275248,LOC108433606 coding upstream 273921 16888337 ~ 16890007 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 499338 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 525999 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 622697 17237113 ~ 17248412 (-)
G149841 NA non-coding downstream 114523 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 151939 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 188380 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 295058 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 357498 16254647 ~ 16255486 (-)
G150089 NA non-coding upstream 404540 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 413701 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 460830 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 510998 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 533485 17147901 ~ 17148608 (-)
acsbg1 acsbg1 other downstream 384650 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 620890 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 893409 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1383999 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1524924 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 438937 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1590235 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1688726 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1690222 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1739558 18353974 ~ 18364036 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03074830_03087612 NA coding CI01000330 null 3074765 ~ 3088813 (-)