LOC113529460 (nrg4)


Basic Information

Item Value
gene id LOC113529460
gene name nrg4
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17053353 ~ 17058906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177725
CAACATTTCTGGGCTCAAACGTATACGCCCAGGGCATGCTTGTGTGACTCTGAGTGCCACAATGACTTTCTTTTTGATATGTCACTCAGACAAGCTGAAGAAACTTACAGTCATTCGACCTGGTAGACGCAAAAGATAATAACTACATCCAGTGTGACGAGTTCATCTGAACCTGTAAGGATGGCagATCATGGTGAACCTTGCACTGGGTCAGATGCATCCTATTGCATGAATGGaggaaaatgctttaaaataccCTCTATGTCCACGCTCACCTGTGTATGCAATAACAACTATGTAGGCAGTAGGTGTGAGCAGTTCCAACTGGAGAGCATATCAGACAAAAGCCATGAGACAGGCATGATCGCTGCTATAgccatcctcctcatcctcatcctgcTGGTGCTGGCTGTGATCATCTACTACATCTGCAAAGCGCAAAGGAAAGCATCAAGAAGTACAAGGGACACAGCATGATCCCAGCATTGAGCAGTATGGCCAATCTCATTGAAAGATAAACTGGCTTCTAAGGCATTGTGATATCTTAATACtttcttaatatttaaattaaggcatgtaaatagtttttttccaatacattttgtttttcaaaaataatttaatatatacttATGTCTTCAGAGTAAAAGTTATATTCCAGATAAGGAAAATGTTACAGCCAATGtaatacatttcaaataaagttattattctTGTCAGTTTGAACCTACTGGCAATAAAACTTTGAGGAAAATGTCTTACCAATGCCACGCATAATCATGGATTCTTCAATTTTATGCACATACAGGCTACAAACAATTCTCGTACAGGTTCAAAAAGAGACCAAACCATGTaatacattttagattccaCTCTTCATTGTGACAGTGAAAAGACAAATCAAACACCCTTTGAATGTAATGATTTAAAAGACTGTACAGATGTTTGAAAATCAtgtcaagaaaataaaaatct
>XM_026918652.2
TGTGACTCTGAGTGCCACAATGACTTTCTTTTTGATATGTCACTCAGACAAGCTGAAGAAACTTACAGTCATTCGACCTGGTAGACGCAAAAGATAATAACTACATCCAGTGTGACGAGTTCATCTGAACCTGTAAGGATGGCagATCATGGTGAACCTTGCACTGGGTCAGATGCATCCTATTGCATGAATGGaggaaaatgctttaaaataccCTCTATGTCCACGCTCACCTGTGTATGCAATAACAACTATGTAGGCAGTAGGTGTGAGCAGTTCCAACTGGAGAGCATATCAGACAAAAGCCATGAGACAGGCATGATCGCTGCTATAgccatcctcctcatcctcatcctgcTGGTGCTGGCTGTGATCATCTACTACATCTGCAAAGCGCAAAGGAAAGCATCAAGAAGTACAAGGGACACAGCATGATCCCAGCATTGAGCAGTATGGCCAATCTCATTGAAAGATAAACTGGCTTCTAAGGCATTGTGATATCTTAATACtttcttaatatttaaattaaggcatgtaaatagtttttttccaatacattttgtttttcaaaaataatttaatatatacttATGTCTTCAGAGTAAAAGTTATATTCCAGATAAGGAAAATGTTACAGCCAATGtaatacatttcaaataaagttattattctTGTCAGTTTGAACCTACTGGCAATAAAACTTTGAGGAAAATGTCTTACCAATGCCACGCATAATCATGGATTCTTCAATTTTATGCACATACAGGCTACAAACAATTCTCGTACAGGTTCAAAAAGAGACCAAACCATGTaatacattttagattccaCTCTTCATTGTGACAGTGAAAAGACAAATCAAACACCCTTTGAATGTAATGATTTAAAAGACTGTACAGATGTTTGAAAATCAtgtcaagaaaataaaaatctagcagtattaata
>XM_034307204.1
TTGTGTGACTCTGAGTGCCACAATGACTTTCTTTTTGATATGTCACTCAGACAAGCTGAAGAAACTTACAGTCATTCGACCTGACGCAAAAGATAATAACTACATCCAGTGTGACGAGTTCATCTGAACCTGTAAGGATGGCagATCATGGTGAACCTTGCACTGGGTCAGATGCATCCTATTGCATGAATGGaggaaaatgctttaaaataccCTCTATGTCCACGCTCACCTGTGTATGCAATAACAACTATGTAGGCAGTAGGTGTGAGCAGTTCCAACTGGAGAGCATATCAGACAAAAGCCATGAGACAGGCATGATCGCTGCTATAgccatcctcctcatcctcatcctgcTGGTGCTGGCTGTGATCATCTACTACATCTGCAAAGCGCAAAGGAAAGCATCAAGAAGTACAAGGGACACAGCATGATCCCAGCATTGAGCAGTATGGCCAATCTCATTGAAAGATAAACTGGCTTCTAAGGCATTGTGATATCTTAATACtttcttaatatttaaattaaggcatgtaaatagtttttttccaatacattttgtttttcaaaaataatttaatatatacttATGTCTTCAGAGTAAAAGTTATATTCCAGATAAGGAAAATGTTACAGCCAATGtaatacatttcaaataaagttattattctTGTCAGTTTGAACCTACTGGCAATAAAACTTTGAGGAAAATGTCTTACCAATGCCACGCATAATCATGGATTCTTCAATTTTATGCACATACAGGCTACAAACAATTCTCGTACAGGTTCAAAAAGAGACCAAACCATGTaatacattttagattccaCTCTTCATTGTGACAGTGAAAAGACAAATCAAACACCCTTTGAATGTAATGATTTAAAAGACTGTACAGATGTTTGAAAATCAtgtcaagaaaataaaaatctagcagtattaata

Function

symbol description
nrg4 Predicted to enable growth factor activity. Predicted to be involved in nervous system development and signal transduction. Predicted to be located in extracellular region.

NR:

description
PREDICTED: pro-neuregulin-4, membrane-bound isoform isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177725 True 975 TUCP 0.38 5 17053366 17058906
XM_026918652.2 False 946 mRNA 0.37 5 17053353 17058864
XM_034307204.1 False 945 mRNA 0.37 5 17053353 17058867

Neighbor

gene id symbol gene type direction distance location
c2cd4a LOC108275248,LOC108433606 coding downstream 163346 16888337 ~ 16890007 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding downstream 252985 16567295 ~ 16800368 (-)
LOC113530224 NA coding downstream 300072 16753176 ~ 16753281 (-)
ice2 ice2 coding downstream 487351 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 507083 16540852 ~ 16546270 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 54848 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 81509 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 178207 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 190632 17249538 ~ 17255164 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding upstream 225118 17284024 ~ 17291324 (-)
G150036 NA non-coding downstream 841 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 34170 17018956 ~ 17019183 (-)
G149854 NA non-coding downstream 438937 16612984 ~ 16614416 (-)
G149841 NA non-coding downstream 554892 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 592308 16460791 ~ 16461045 (-)
LOC117597939 NA non-coding upstream 16340 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 66508 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 88995 17147901 ~ 17148608 (-)
G150237 NA non-coding upstream 306544 17365450 ~ 17365787 (-)
G150284 NA non-coding upstream 381967 17440873 ~ 17444825 (-)
acsbg1 acsbg1 other downstream 825019 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1061259 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1333778 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1824368 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1965293 15086113 ~ 15088060 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1145745 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1244236 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1245732 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1295068 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1366413 18425319 ~ 18428973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110495704 nrg4 misc NC_048566.1 CM023220.2 73076020 ~ 73078379 (-)