G150089


Basic Information

Item Value
gene id G150089
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17018956 ~ 17019183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177779
GAAAAAACTCCTTCACTGTTTGTTTCCATTTCACTGTACTATAAAACGGCATGGTATGTGCAACTCCTCATTAATGCCACGCATAAGTCACAATCAGCTCTGTACTGGGATAAATCATCAAAGCTAAATGaggacaactgggtcagagaaAGTTCTGGTTCAGGATTTGTGCTTGCAACTACATTCAGCACAGACAGGTCAGAATAATGATATCAGACCAGCAATGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177779 True 228 lncRNA 0.41 1 17018956 17019183

Neighbor

gene id symbol gene type direction distance location
c2cd4a LOC108275248,LOC108433606 coding downstream 128949 16888337 ~ 16890007 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding downstream 218588 16567295 ~ 16800368 (-)
LOC113530224 NA coding downstream 265675 16753176 ~ 16753281 (-)
ice2 ice2 coding downstream 452954 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 472686 16540852 ~ 16546270 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 94571 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 121232 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 217930 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 230355 17249538 ~ 17255164 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding upstream 264841 17284024 ~ 17291324 (-)
G149854 NA non-coding downstream 404540 16612984 ~ 16614416 (-)
G149841 NA non-coding downstream 520495 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 557911 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 594352 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 701030 16309890 ~ 16317926 (-)
G150036 NA non-coding upstream 8934 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 56063 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 106231 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 128718 17147901 ~ 17148608 (-)
G150237 NA non-coding upstream 346267 17365450 ~ 17365787 (-)
acsbg1 acsbg1 other downstream 790622 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1026862 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1299381 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1789971 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1930896 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 34170 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1185468 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1283959 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1285455 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1334791 18353974 ~ 18364036 (-)

Expression


Co-expression Network