G150237


Basic Information

Item Value
gene id G150237
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17365450 ~ 17365787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU177974
CAGAGCTTCCATGAAATGCCCCCGTGCGTTGTTCGGACTGAATCATTTCTCTTGCTCGGAGTGCGGCATCACATTTTCACATCGCGCTCTTTATTCATTCAGTCGTGTTCATGTGGGCAGGGAACTGAACCTGACTCTGCAGTTTGTGTTAATATTGGAATACGTCACCGTCCATAGATAGGTTTTACAGTAAGGCGACGTGCTATGCGCTCTTGATTTTTGTTCCCACCCCTGGAGTAAGGAATGGACTTTCCCAGACAGACATGTCACGGCTGTTGC

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0009888 tissue development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177974 True 279 lncRNA 0.48 2 17365450 17365787

Neighbor

gene id symbol gene type direction distance location
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding downstream 74126 17284024 ~ 17291324 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding downstream 110286 17249538 ~ 17255164 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding downstream 117038 17237113 ~ 17248412 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding downstream 130593 17140415 ~ 17234857 (-)
etfa etfa,LOC107712526,LOC107557988 coding downstream 237166 17113754 ~ 17128284 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 39623 17405410 ~ 17420203 (-)
apba2a LOC108275011,LOC106584731 coding upstream 59120 17424907 ~ 17434437 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding upstream 82821 17448608 ~ 17455078 (-)
dldh dld,dldh coding upstream 188305 17554092 ~ 17560823 (-)
LOC113529452 NA coding upstream 388597 17754384 ~ 17760039 (-)
G150130 NA non-coding downstream 214969 17125414 ~ 17150481 (-)
G150139 NA non-coding downstream 216842 17147901 ~ 17148608 (-)
LOC117597939 NA non-coding downstream 287365 17075246 ~ 17078085 (-)
G150036 NA non-coding downstream 312938 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 346267 17018956 ~ 17019183 (-)
G150284 NA non-coding upstream 75086 17440873 ~ 17444825 (-)
G150310 NA non-coding upstream 138499 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 185303 17551090 ~ 17574660 (-)
G150424 NA non-coding upstream 233001 17598788 ~ 17599194 (-)
G150459 NA non-coding upstream 280946 17646733 ~ 17646945 (-)
LOC113529460 nrg4 other downstream 306544 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1137116 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1373356 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1645875 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2136465 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 838864 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 937355 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 938851 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 988187 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1059532 18425319 ~ 18428973 (-)

Expression


Co-expression Network