G150261 (LOC108275011)


Basic Information

Item Value
gene id G150261
gene name LOC108275011
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17430143 ~ 17434377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178004
GGACCTCAGGCAGTCTTCTTTAGAGGGTCTGTCCAGGTCTTTCTGCAGCTGTGGGTCGAGAGGCTGCATGGGTGTGTTGGGGGCACTGGGTCTGCTTTCTTCCCTGTGTGGTCTTAGCACTGATACTTGTGAACTTTCTGGAATCCTTTTCTCATCACATGACTTCTCGGCTGtatccctgtctgtctcactacTCTGAGATCCTactttcatttttgttcttACTTCATTTACAATCTGATCCAAATCCTCGCCTGTGTCCACTGATTGGTCCCTATCCCTCCCGGTCTTTGCTCTATAGCTATGAAGACACCCCTGTCCCCTGCCTATACTGTCTTCAGGACTGTCACTCCCCATATGTAAACActtgtcttctcttttttctcttccatgATCTCTGTATGAATGTCTCTTTTTAAAATCGTCTCTATTCTCAGTATCTTCAGGTTTGGTCATACCATTAAGTCTACAGTTTCTGCTGCCTCTGTCCTCCTTACAAATCTGATGCCCTCTGAATATAGACCCTAGTTTTGAGTTTTTATCTGCCCTGCCCACTTCACAGTTTCCTGAATCATCAACTTTAACTTCAGCATTGCTCTTTTTATTGCCTTCCCTGTGACCAATAAATGAACTCTGGGTATCACCCTTACACTTTCTGGGATGCTTTTATCCATTCCGTAATCTTTACTTAAATCTTCTTCTCCTCTACTCATTCCTTTACTGTAATTTGATCCCTGATGATGGTTTTTACTGTCGACTCGTAAATCACACTGTCCTTTGCAGATAATTCCATCCTGACTCCCTACTGCCTTCTCTTGTTCATAAGCAAAATAGGTTTCATCTTCCTCCAcagcatcatcatcaacatcatcatcatcatctagtTCCTCTgcatcttcttcatcatcttcttcatcctcaGCCATGGGAGCCTGAATGAAAGTAGACTTGGTTATAGGCTCGGGACATTTGTGGACCAGCTCCTCTGTACCTTGCTGGAGTACTTCATAAAACCCTTCACAGAATTCCCAGGCACCTCCTGGATTTCCTCCAGCATCTGGTTCTCTGGAAGTACTTGGTCTATCACTGCTTTCAGCACCCTCGTGACAGTCCATTCCTTCCAAATAGCTCTCATCTTCAGGGCAACAGTGAACATAGTAAGTCATCCCATCTGCATCAGTATGCAgttcctcatcttcctcataGTCctgctcttcttcctcctctgatCCCACATTATCATATTCAGACACTGAGTCTTCCTCCATGCTGTCACGATGAATAGGACTATCTCCATGGTCGAAATCTTCCCCTGAGACAGAGCCATCAGTGGGACCGAAGCTGGCTGGGATTGGTGTGCTTGACTGGCTTTCTGTGTTACTGCTATGAGGTTCATCAGGATCCACTCTGGCTCTGGAGTGTTTAACTGTCTGCTCTGGTAGAGATGAGATGTACTGTGGATGATCAGGCACTGCCCTGGAACCCTGGCTTTGTCTAAGAGCCATAACTGACTTCAGTAAGCCCACGCAAGTGGGATTCCTATGGTGCTTACTGCATTCAGTACGCACAGCTCGGGCAGCCATCCCGTTTCAATGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178004 True 1597 lncRNA 0.46 2 17430143 17434377

Neighbor

gene id symbol gene type direction distance location
duox2 duoxa1 coding upstream 6678 17420208 ~ 17423465 (+)
zgc:101540 slc27a2,LOC108414297 coding upstream 107285 17316673 ~ 17322858 (+)
cep152 cep152 coding upstream 114901 17298741 ~ 17315242 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 131923 17291387 ~ 17298220 (+)
atp8b4 atp8b4 coding upstream 146217 17262433 ~ 17283926 (+)
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding downstream 2857 17437234 ~ 17443674 (+)
si:ch73-330k17.3 LOC108275018,LOC108436903,LOC107688943 coding downstream 10984 17445361 ~ 17447657 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding downstream 25113 17459490 ~ 17467526 (+)
LOC113529594 LOC108275015 coding downstream 34543 17468920 ~ 17473913 (+)
LOC113529627 NA coding downstream 47085 17481462 ~ 17489363 (+)
G150152 sqrdl non-coding upstream 174806 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 193197 17236641 ~ 17236946 (+)
G149729 NA non-coding upstream 856271 16540599 ~ 16573872 (+)
LOC117597920 NA non-coding upstream 955915 16460380 ~ 16474228 (+)
G149723 NA non-coding upstream 981003 16446039 ~ 16449140 (+)
G150265 NA non-coding downstream 11872 17446249 ~ 17446460 (+)
G150268 NA non-coding downstream 22543 17456920 ~ 17457135 (+)
G150407 NA non-coding downstream 268177 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 398389 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 477260 17911637 ~ 17912583 (+)
LOC113529564 ano9,LOC108442698 other upstream 1607552 15807990 ~ 15822591 (+)
svip svip other upstream 1705052 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1777459 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3600812 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3653272 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 399860 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 748177 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1240633 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1287218 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1313450 18747827 ~ 18796259 (+)

Expression


Co-expression Network