G150265


Basic Information

Item Value
gene id G150265
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17446249 ~ 17446460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178009
AGCCTTTCCTATTAAGCACAGGGGCAAATACAACATCTGCAGTAGGTTTCAGATACAAAAGGACATGGCAATTTGACAGCATGTAATGAGACTACTGATAACGCTAGTGcgtcatgtttgtttttatgcttCCGCTCTTTTTTGGATCACATTTGTTTAGTATGCATAATTCTGTTTTCAGGCATTTAAGCAGTTTTAATAACCTGATTTTG

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU178009 True 212 lncRNA 0.37 1 17446249 17446460

Neighbor

gene id symbol gene type direction distance location
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding upstream 2575 17437234 ~ 17443674 (+)
duox2 duoxa1 coding upstream 22784 17420208 ~ 17423465 (+)
zgc:101540 slc27a2,LOC108414297 coding upstream 123391 17316673 ~ 17322858 (+)
cep152 cep152 coding upstream 131007 17298741 ~ 17315242 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 148029 17291387 ~ 17298220 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding downstream 13030 17459490 ~ 17467526 (+)
LOC113529594 LOC108275015 coding downstream 22460 17468920 ~ 17473913 (+)
LOC113529627 NA coding downstream 35002 17481462 ~ 17489363 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding downstream 44375 17490835 ~ 17496461 (+)
LOC113529626 LOC108275292,LOC108436907 coding downstream 52857 17499317 ~ 17504896 (+)
G150261 LOC108275011 non-coding upstream 11872 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 190912 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 209303 17236641 ~ 17236946 (+)
G149729 NA non-coding upstream 872377 16540599 ~ 16573872 (+)
LOC117597920 NA non-coding upstream 972021 16460380 ~ 16474228 (+)
G150268 NA non-coding downstream 10460 17456920 ~ 17457135 (+)
G150407 NA non-coding downstream 256094 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 386306 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 465177 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 468165 17914625 ~ 17915242 (+)
LOC113529564 ano9,LOC108442698 other upstream 1623658 15807990 ~ 15822591 (+)
svip svip other upstream 1721158 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1793565 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3616918 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3669378 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 387777 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 736094 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1228550 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1275135 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1301367 18747827 ~ 18796259 (+)

Expression


Co-expression Network