G150284



Basic Information


Item Value
gene id G150284
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17440873 ~ 17444825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU178033
TTCTTGAAgacttttattaaattagatCTCTATAAAACACAGCAGAATGCTATCGTTTGTTTTGCTGACAGTAAATTTTCATAATGCAAATCTGttactttaaaaatggaaaCTCCCAGGTTCCATGAGAAGACGTCTTATATGCACTTCATTTGCAAAGCAACCATAGTAATATTCTTAAAATCTCTTGTAACAATACCCACCTGCATGGTTTAGTGACACTGTGCATAAAGGAACATGTTAAACTGCAAATATAGCATGATGTTCACAAAATTAGtgctgcaaaagaaaaaaagaaaaaaaaatcgtaaCACAccttaaaatacaatattttaaatgtgtgacTGAATATAGCTCCATAATTCTGATTCAAATGGAATGCAATCATTAACTGCTCTGTCTCTGCAAGTAGAAATACGCTTTTATCAGATTTGGTACACTACACTCAACACACTAGGCTCAATGCATCTAAACAAAGATTTATACATGATCACCTAGAAGTagaaaaatgaaactgtttACACAACTTCCATAGGCATGTGACTGCTTCTAAGGCAATGCTTTACATTAAGCTTCccttaattaacattatttactgtacTAATTAACATTAGCAAACCATAAACTTTAACATTACTAAACAATAAGCAATGTACTAACTAATGTTGgattaattgttaaataaatacacctgCACTGACCGATGTTTATTGtatccatgactaaaaataagtcagaataaattaacagtaataaatttACACTATGTTCCTTACATCTGAATGTAGCTAGTTAACAGCCGCAAACATTTTGGATTCATTGTGgacttaattttattaattgatGGAATAAACACTGGTTAAtgtaggtgttgattatttaGCTTGTTTggttagtttattatttttaaaaaattacaagcAATACAAGTGTAAgttattttgttaatgttaatatgtaTTAATGCTTATGTTCATGTAAACTAAATAATGTCAGTTGAGAGAACCCTAATGTAAAGCATTACTGCTTTTTAGGGCTTTATGTGTTGTCTTACTCAGCAAAAGCAGTGCCCAGTAATGTCTATAGTTATCACAATGCAAGGACAGCAGAAATGTAATCAAAATACATAACATATagacatttttctgaaatttgcATAGAatgtcaaatttattttaatgtcaagTAGCTCTTTTAAACAGTAATACTGTCAActcttttatacattttcacgTGAAGCTTCTGTTTCACATCGgtcagttttcattttttactttcaaACTTTTACTAAAGGACATTACCTGACTATGACCTTTTTCCACAGCAAACACTAGAATGACCTACAGTCATTATAAACCAGAGAAAGATGCTTCACTTAAGTCTTTCTCAGAGTAAACCACTTAAGCTTAGGCTAGTGTGTGTTACATGGGATGTGGTTCAGTTTTCGAGCTTGATTCTGGACGTGGGTCTGGCTGTAGGGAGAGGTCATGCGCTGTAGAGGTTTATGTTTCGTCACTCAAAGAATATGATAGGTTACGAAGCGGGGGTCACATAAAATCCTCATAGTCTTGTACATAACCTCCATCAAACTCGCCGTAGTCATCAAGGTCATCTTTCATCTTGGCTTTTAATCCACCTCCTGGTAAAccacctttctttttcttctttcctttatTTTCTTTTCTTGCCTCTGCTTCTCACTGAGTAACACTGTGAGTGAGTTGTTAATTTTCTTCAAGTCTTCAACTTCCACTGTAACAAATTACAAGTCACGGCTGAAGCATatgtaaaaatacacatttgacCAGGATTGACTGCATCAGAAGACAGACAGTGAAGTTGTGTGAAAGCCAAACTCACATGAAAGACACAGGTCTCTGAACAGCGACTCTAAAAAGCTGGAGTAGTGTATTGACTTCTCGTAGAGAgttattttctctttcagcaACCGCTCAAACTCTGTAAAGTCATCTTTGGAGGAAGGGTTCATGGCATCTATTCCTGTTACGTTATTCGATACAATGCCAAAGCATCTTTGGCTAGTTCCAAATCTGAATCCTCCTGAAGTTTCTTCAATCTAAGTTTTTCTGCTAACTCCTCCTCTGGTGTGCATTCTGTGCTGTCTTTAGATTCCTCTAACTGCCACAGACATAGTTCTCTTcaattaacaacaacaatgtaCTGGTGCTCCATTCGGTGTTCCATATTTACTACTAGTGAGTTTATCTCTCAGAACAAAACCACATGTCTAGCATCATTCTTTGCTTTTAATTCCATAATGAATTCTATTGTAAGGGCCTCATTTTAGATCAAGACTATCCAAATGCTTCATACATGCATACCTAAGACATAACATCATAACATTGGCGAGGAGCAACTCTTTTTTCTTATGTTCCCTCGGGTTAGGGCAGGACAGGCTGAACTGATGATCTATATTAATGAATTTGACCCcagatacaaacacagacatCAGAGCTCAATCACATAAGGCTTGATACAAGGACGAAAGTTTACCTAATGTTTATTCACACAAAAGATTATATTAGCCATTCTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU178033 True 2554 lncRNA 0.35 4 17440873 17444825

Neighbor


gene id symbol gene type direction distance location
apba2a LOC108275011,LOC106584731 coding downstream 6436 17424907 ~ 17434437 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 20670 17405410 ~ 17420203 (-)
tjp1b LOC108274984,LOC108414298 coding downstream 51932 17323198 ~ 17388941 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding downstream 149549 17284024 ~ 17291324 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding downstream 185709 17249538 ~ 17255164 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding upstream 3783 17448608 ~ 17455078 (-)
dldh dld,dldh coding upstream 109267 17554092 ~ 17560823 (-)
LOC113529452 NA coding upstream 309559 17754384 ~ 17760039 (-)
LOC113530008 hyal4,LOC108274447,LOC108274446 coding upstream 382655 17827480 ~ 17831769 (-)
LOC117598082 LOC108274445 coding upstream 388288 17833113 ~ 17835443 (-)
G150237 NA non-coding downstream 75086 17365450 ~ 17365787 (-)
G150130 NA non-coding downstream 290392 17125414 ~ 17150481 (-)
G150139 NA non-coding downstream 292265 17147901 ~ 17148608 (-)
LOC117597939 NA non-coding downstream 362788 17075246 ~ 17078085 (-)
G150036 NA non-coding downstream 388361 17028117 ~ 17052512 (-)
G150310 NA non-coding upstream 59461 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 106265 17551090 ~ 17574660 (-)
G150424 NA non-coding upstream 153963 17598788 ~ 17599194 (-)
G150459 NA non-coding upstream 201908 17646733 ~ 17646945 (-)
G150463 NA non-coding upstream 206848 17651673 ~ 17651880 (-)
LOC113529460 nrg4 other downstream 381967 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1212539 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1448779 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1721298 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2211888 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 759826 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 858317 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 859813 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 909149 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 980494 18425319 ~ 18428973 (-)

Expression



Co-expression Network