G150495 (grm8b)


Basic Information

Item Value
gene id G150495
gene name grm8b
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17698687 ~ 17699084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178258
GGCTGATTAGAATTTGTTGATAACCATTAGAGAGGAATCAACCGTTAAAAAGAAGTAGTTAGCTGTCAGTGCAAGTGAATGGAACTGTAATGAAGGGTTTTTTGCTCAAATACAgtacatcatcacacatcacaaGAGGTGAGGGAATATTTTGTTAGCAgtagaagagaggaagaaactCACCGTTAAAGCTGACATTGCGGATGTAACCCAGCAGTTCCTTGCCGTCGATGTTGCTCATGCGAGAGCACAGTCCTGGGCTTCCGGAGCACAGGTCTCGGTGCATGCGGTGAAGAGCATGAGCCATGGCATAAACTGCATCCATCACAAACTGCACTTTCCCCTCCTGCTCGAAGCTGGAGTCCCTGCCCACCTTCTCCAAGCCTAACAGttaaaac

Function

symbol description
grm8b Predicted to enable group III metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and sensory system. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; autistic disorder; and schizophrenia. Orthologous to human GRM8 (glutamate metabotropic receptor 8).

NR:

description
glutamate receptor, metabotropic 8b precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178258 True 398 lncRNA 0.47 1 17698687 17699084

Neighbor

gene id symbol gene type direction distance location
dldh dld,dldh coding downstream 137864 17554092 ~ 17560823 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding downstream 243609 17448608 ~ 17455078 (-)
apba2a LOC108275011,LOC106584731 coding downstream 264250 17424907 ~ 17434437 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 278484 17405410 ~ 17420203 (-)
tjp1b LOC108274984,LOC108414298 coding downstream 309746 17323198 ~ 17388941 (-)
LOC113529452 NA coding upstream 55300 17754384 ~ 17760039 (-)
LOC113530008 hyal4,LOC108274447,LOC108274446 coding upstream 128396 17827480 ~ 17831769 (-)
LOC117598082 LOC108274445 coding upstream 134029 17833113 ~ 17835443 (-)
LOC117597889 LOC108274445 coding upstream 141028 17840112 ~ 17842564 (-)
LOC113530148 hyal4,LOC108436916,LOC108181664,LOC107573489,LOC107752304,LOC107753633 coding upstream 147877 17846961 ~ 17860347 (-)
G150469 NA non-coding downstream 42898 17655589 ~ 17655789 (-)
G150463 NA non-coding downstream 46807 17651673 ~ 17651880 (-)
G150459 NA non-coding downstream 51742 17646733 ~ 17646945 (-)
G150424 NA non-coding downstream 99493 17598788 ~ 17599194 (-)
G150340 NA non-coding downstream 124027 17551090 ~ 17574660 (-)
G150551 NA non-coding upstream 60337 17759421 ~ 17759699 (-)
G150631 NA non-coding upstream 213556 17912640 ~ 17912855 (-)
G150776 NA non-coding upstream 413168 18112252 ~ 18112477 (-)
G150834 NA non-coding upstream 555991 18255075 ~ 18255418 (-)
G150854 NA non-coding upstream 602209 18301293 ~ 18302959 (-)
LOC113529460 nrg4 other downstream 639781 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1470353 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1706593 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1979112 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2469702 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 505567 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 604058 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 605554 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 654890 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 726235 18425319 ~ 18428973 (-)

Expression


Co-expression Network