G150589 (LOC108274445)


Basic Information

Item Value
gene id G150589
gene name LOC108274445
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17834237 ~ 17842535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178368
CAGCTCAGTACTATGCTGTAATAAAAAGTTGGCTTATTTATCCCTGAGATCTCACCTCACTCAGAAATATTTTGTTCTGATCACTGAAGACAGGACGTAAGTAGACATAAATGGGTGCAGTGTAGAGAGACTTTGGAAGAGCAGATACCCTCACAGCTTCCTTCACACGACCCCGGACAAACAGAGCTGCGTCAGGTTGTTCCCTCAGGCTGACCGGCAAATATGCTGAGGGAAATAACGCTGTACTGGACTCCCACAACCAAAGGAGCTCATTGTTGCGGCTTTTCTCAATCTCTGGGCATTCACCTGTGTAGCCTGGATTCCCCCATCCATAGTTGTAGCAATCTGGAAACAGGTAGAAGCCCCAGAGGTAGTTTGGACGCAGTTTGATCCCCAGCTGCATGGTCTTCTCCATGTAAGCCCTGGCTGCGTTCTCAAATTGCTGCCTAGCAACAGAAACAGCCTCACTGGGGGAtagaagtggattattttcctttgcaTACTGAATGGAAAGCTTCTGATAGATGTCTTTGGAGGCCCAATTCCTGGCCCACAGTGGACGCCATTCCTCCCAGTCAATCACAGCCAAGCCTGGGGTGAACTCGGGAATATACTGGATGATATCATTATGGGCTTTCACAAGGCTGGCTGTCAGGTTTCCTTTCTGTGGAATGCCACCATTAAACTGCCTCCCTGTGCTAGGCTCGGTGTATGGGTACAGTCCAAGCCGATTGGAGTAGAACAGGAAAAGAAACTGATTAGGTTCACTGGCTGGTGTGGTCACTGCTTGAAAGACAGAAAAGTCCAAAGGAATCTTGAGGTCTCGGCACACATACGTAGGTGCGTTCCATATGACTGCAAAAGGTGTGTCCTTAAAGATTGGAGCAGCTGTGAGGGGAAGAGACAAGGCAGTGCCGAGGTAGAAGTTTACAGAAAAGGTTAAAATGAGCAGGTAAATA
>TU178369
CAGCTCAGTACTATGCTGTAATAAAAAGTTGGCTTATTTATCCCTGAGATCTCACCTCACTCAGAAATATTTTGTTCTGATCACTGAAGACAGGACGTAAGTAGACATAAATGGGTGCAGTGTAGAGAGACTTTGGAAGAGCAGATACCCTCACAGCTTCCTTCACACGACCCCGGACAAACAGAGCTGCGTCAGGTTGTTCCCTCAGGCTGACCGGCAAATATGCTGAGGGAAATAACGCTGTACTGGACTCCCACAACCAAAGGAGCTCATTGTTGCGGCTTTTCTCAATCTCTGGGCATTCACCTGTGTAGCCTGGATTCCCCCATCCATAGTTGTAGCAATCTGGAAACAGGTAGAAGCCCCAGAGGTAGTTTGGATGCAGTTTGATCCCCAGCTGCATGGTCTTCTCCATGTAAGCCCTGGCTGCGTTCTCAAATTGCTGCCTAGCAACAGAAACAGCCTCACTGGGGGAtagaagtggattattttcctttgcaTACTGAATGGAAAGCTTCTGATAGATGTCTTTGGAGGCCCAATTCCTCGCCCACAGTGGACGCCATTCCTCCCAGTCAATCACAGCCAAGCCTGGGGTGAACTCGGGAATATACTGGATGATATCATTATGGGCTTTCTCAAGGCTGGCTGTCAGGTTTCCTTTCTGTGGAATGCCACCATTAAACTGCCTCCCTGTGCTAGGCTCGGTGTATGGGTACAGTCCAAGCCGATTGGAGTAGAACAGGAAAAGAAACTGATTAGGTTCACTGGCTGGTGTGGTCACTGCTTGAAAGACAGAAAAGTCCAAAGGAATCTTGAGGTCTCGGCACACATACGTAGGTGCGTTCCATATGACTGCAAAAGGTGTGTCCTTAAAGATTGGAGCAGCTGTGAGGGGAAGAGACAAGGCAGTGCCGAGGTAGAAGTTTACAGAAAAGGTTAAAATGAGCAGGTAAATA
>TU178370
CAGCTCAGTACTATGCTGTAATAAAAAGTTGGCTTATTTATCCCTGAGATCTCACCTCACTCAGAAATATTTTGTTCTGATCACTGAAGACAGGACGTAAGTAGACATAAATGGGTGCAGTGTAGAGAGACTTTGGAAGAGCAGATACCCTCACAGCTTCCTTCACACGACCCCGGACAAACAGAGCTGCGTCAGGTTGTTCCCTCAGGCTGACCGGCAAATATGCTGAGGGAAATAACGCTGTACTGGACTCCCACAACCAAAGGAGCTCATTGTTGCGGCTTTTCTCAATCTCTGGGCATTCACCTGTGTAGCCTGGATTCCCCCATCCATAGTTGTAGCAATCTGGAAACAGGTAGAAGCCCCAGAGGTAGTTTGGACGCAGTTTGATCCCCAGCTGCATGGTCTTCTCCATGTAAGCCCTGGCTGCGTTCTCAAATTGCTGCCTAGCAACAGAAACAGCCTCACTGGGGGAtagaagtggattattttcctttgcaTACTGAATGGAAAGCTTCTGATAGATGTCTTTGGAGGCCCAATTCCTGGCCCACAGTGGACGCCATTCCTCCCAGTCAATCACAGCCAAGCCTGGGGTGAACTCGGGAATATACTGGATGATATCATTATGGGCTTTCACAAGGCTGGCTGTCAGGTTTCCTTTCTGTGGAATGCCACCATTAAACTGCCTCCCTGTGCTAGGCTCGGTGTATGGGTACAGTCCAAGCCGATTGGAGTAGAACAGGAAAAGAAACTGATTAGGTTCACTGGCTGGTGTGGTCACTGCTTGAAAGACAGAAAAGTCCAAAGGAATCTTGAGGTCTCGGCACACATACGTAGGTGCGTTCCATATGACTGCAAAAGGTGTGTCCTTAAAGATTGGAGCAGCTGTGAGGGGAAGAGACAAGGCAGTGCCGAGGTAGAAGTTTACAGAAAAGGTTAAAATGAGCAGGTAAATA

Function

NR:

description
PREDICTED: hyaluronidase PH-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178368 True 959 TUCP 0.48 2 17834237 17842535
TU178369 False 959 TUCP 0.48 2 17834237 17842535
TU178370 False 959 TUCP 0.48 2 17834237 17842535

Neighbor

gene id symbol gene type direction distance location
gpr37a gpr37 coding upstream 22273 17806125 ~ 17811964 (+)
pot1 pot1 coding upstream 30439 17760318 ~ 17803798 (+)
grm8b grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding upstream 111156 17597073 ~ 17723081 (+)
znf800a znf800 coding upstream 239507 17576708 ~ 17594730 (+)
si:dkey-42p14.3 LOC108274539 coding upstream 270073 17562187 ~ 17564164 (+)
wasla wasl,wasla,LOC108275301,LOC107753630,LOC107659464,LOC107598884 coding downstream 48352 17890887 ~ 17910861 (+)
iqub iqub coding downstream 79020 17921555 ~ 17931146 (+)
slc13a1 slc13a1,LOC108274433 coding downstream 91755 17934290 ~ 17942955 (+)
cadps2 cadps2 coding downstream 106756 17949291 ~ 18079622 (+)
fezf1 fezf1 coding downstream 240407 18082942 ~ 18086735 (+)
G150407 NA non-coding upstream 131479 17702554 ~ 17702758 (+)
G150268 NA non-coding upstream 377102 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 387777 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 399860 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 578900 17253667 ~ 17255337 (+)
G150592 NA non-coding downstream 69102 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 72090 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 288311 18130846 ~ 18139145 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding downstream 499708 18342243 ~ 18345729 (+)
G150900 NA non-coding downstream 524347 18366882 ~ 18367108 (+)
LOC113529564 ano9,LOC108442698 other upstream 2011646 15807990 ~ 15822591 (+)
svip svip other upstream 2109146 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2181553 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 4004906 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 4057366 13761334 ~ 13776871 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 340019 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 832475 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 879060 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 905292 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 1278616 19121151 ~ 19125201 (+)

Expression


Co-expression Network