G150854


Basic Information

Item Value
gene id G150854
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18301293 ~ 18302959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178674
TTTTAACTGAAAACAATTGACCCTTTCACTGaacttttcatcttcatcaaaGATTTTATTAAGAAATAGACATTAACAAGAATGAAATAGACTCAGTATACAGTCCAGGAGACCTGCTGAATCTTTTTAGGCCCGATAAGGTTATGAAGTGCCTCCCTGGATTTATCTAAAATACAAACCAAAGATAgttttaaagcatattttaaCCCAGTAGTGACAAGGAATCAGAAAGATATGTGAAGTATATCATTTCATGTATATCAAACATGATATCACTGTTCtgtttatatagaaataatacTACAATATACCTGTAATGAGGGGACATCCATGAAAAAGGAATATTCTGATGTTGACACAGTTTGAGAGAACAGCAGCCACAGCCTTGTCTGTTAAGTTACGGCACCGTACCATCTGTAACTCCTTTTTGAGAATAAGTACAAGATGAAGCATGTTCAAGTAGAATGAAAGCATCAACCAATGCATCAATCTTTTAGCCAAGTTTTTAGGGGTCTTGATATATAGTTCAACAGTAACAGGGTAAATATTACTATACACAggtgaaaatgtaaaacacatcccgaagtgttttattccccttgtACTTGTTAACCACAGCAACCTgttaacaattacaattttttttatttatgatgagtttatagttgcatttaattcAAGACAAGTTACTTCGTGGTATCGCttatgttagagcagctataaacaatcgttcaccttcatttcactattatttaataatatgacaaaaaaaaatgcagcttgttactgagaaactgcaaaacgcTTTGTCTTTAGAATTTCCCATGGCAAAGTAACAGGTTTGTTCCAAAGCACTGGCTGTCTGATcgttgtcagagctgctttcaACATATTATGACCAAagaaatttgagaattcagcagtgttgtGCTATAATAAATACCAGTGAATACACACATTACCTTTAAGCTCTGGCAGCACACTCCAGTTACAAGACCAATAACACCTTCGTCAGTGACCTGTCAGGAGCATGTCAAGTAATAAAATTACAGTTACACTAATAAATCTAGCAAAatccagttttaaaaaaagactctaAAAGCATTATTGCCTTTTAGAATAACACTGAAAGGTTAACAAAGTCCTGTATCAATGCATATCACTGAAACAGCACTACATCAGAAGATACAAAGTGATTCTAACGCTATTCTGTAATAGTGAAAtgtttagttatattacttTTTAGCCATTTGGTTCAGCTCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178674 True 1266 lncRNA 0.34 3 18301293 18302959

Neighbor

gene id symbol gene type direction distance location
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 55589 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 82552 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 98668 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 136483 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 379772 17914613 ~ 17921521 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 15665 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 37494 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 75770 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 101553 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 145183 18448142 ~ 18457983 (-)
G150834 NA non-coding downstream 45875 18255075 ~ 18255418 (-)
G150776 NA non-coding downstream 188816 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 388438 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 541594 17759421 ~ 17759699 (-)
G150495 grm8b non-coding downstream 602209 17698687 ~ 17699084 (-)
G150875 NA non-coding upstream 3250 18306209 ~ 18306443 (-)
G150891 NA non-coding upstream 35543 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 70154 18373113 ~ 18376841 (-)
G150988 NA non-coding upstream 118534 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 119698 18422657 ~ 18423325 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 86806 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1242387 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 2072959 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 2309199 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2581718 15711993 ~ 15719575 (-)
etfbkmt etfbkmt other upstream 183 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1679 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 51015 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 122360 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 989250 19292209 ~ 19295843 (-)

Expression


Co-expression Network