etfbkmt (etfbkmt)


Basic Information

Item Value
gene id etfbkmt
gene name etfbkmt
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18303142 ~ 18305329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178677
AACATGCGCGTTTGCTAGCTTATTGTATGAAATGCCTTTGAGCTAGCGACTCACTGAGCTGTTTATCGATATGAACCGAggactgtttatttatttacgtgGCAAAGACACGTTGAGAAAAACCCTTCAGACTGTTCGACAAAGAAGCATTCGCCATTATATGAAATACTCTTTACAGTGAAATGTCGCTTCTGGACGGAGAGAGCAGAGTTGTGGCCACTTCCTGATCCCTTCTGGGCTATATACTGGCCTGGGGGACAGGCACTGACCAGGTAATTGTGCC
>XM_026920049.2
GCCatataaaagaagaagaagaagctggtTATATGTGCGCATGCGCGCATAACATGCGCGTTTGCTAGCTTATTGTATGAAATGCCTTTGAGCTAGCGACTCACTGAGCTGTTTATCGATATGAACCGAggactgtttatttatttacgtgGCAAAGACACGTTGAGAAAAACCCTTCAGACTGTTCGACAAAGAAGCATTCGCCATTATATGAAATGTaaaacagaaactgaaataAAGCGGTTTATTGTAGAAAACACTGAGATAGTCAAAGGTCAAAGTTTAACACCCGAGATCTCTTTAAGACTCTTTACAGTGAAATGTCGCTTCTGGACGGAGAGAGCAGAGTTGTGGCCACTTCCTGATCCCTTCTGGGCTATATACTGGCCTGGGGGACAGGCACTGACCAGgtatcTTCTAAACAATCCAGAGCTGTCAGTAGGTAGAAGAGTGCTGGATCTCGGATGTGGCTGTGGTGCATCTGCTATTGCTGCTAAACTCAGTGGGGCTGCTCATGTTGTGGCCAATGACATTGATCCAATTGCTGCTATTGCCACAAAGATGAACTGTGAGCTGAATGGATTAGAGCCCTTGCCTTGTGTGACTGACAATCTGATCGGTTCAGAACCTGAGAACTGGGACCTCATCCTGCTGGGAGACATGTTCTATGATGAGACTCTTACAGACAGCTTACATAAGTGGCTCTACAAATGTGTTAAGCTTCACAGAACACAGATCCTTATTGGAGACCCAGGACGGGCTCAGTTTGAGAGCCATGACGTCAAGGCACTGTTGTATGAACGGGCTCGGTTTGAGTTACCTGACTCGGTTCGAGAGGAAAATTATGGACTGACAAGTAGCACAGTGTGGTGCTACAGACCTGATTACTAAGGTACTTTTTCAACAAGAAAATCTGTGTATCTGTTAACAATAAGCAGTTCTATGCTTTAAGAAtactttaaaaaacataactgACACTTCACACTCATTTTAATAAGatgtacattatttataggACTTGGCAGGTTACTGTGAGAAAGCACTGGTTGTAGGATTTTCACCCATATGTAatatgaaagctttttttttttcctgtaagaaCGCTCGAGTATTTCTGAATGTTTCCAAAATTTCAAATATGCAAAATCTGTCCACTTCAGAGTTCATTCAAGAAACTGTTCAAGTTAGAACCATTCAATCAAAAAGAGATTACACtcatggaaaataatcatcctTTAGGCAGGAGAAGATGCAAGAATCTCCCTCACATCACCTCTCTCCTGATctcttccctttctttctttc
>XM_026920050.2
CTTTAAGACTCTTTACAGTGAAATGTCGCTTCTGGACGGAGAGAGCAGAGTTGTGGCCACTTCCTGATCCCTTCTGGGCTATATACTGGCCTGGGGGACAGGCACTGACCAGGGAAGATACCATGATCAAGAAGCTGGTTCACCCAGGGcgaggctcagccattgcactcCGGTTGTGCTGACCCCtgcgaattccccaaatgtatcTTCTAAACAATCCAGAGCTGTCAGTAGGTAGAAGAGTGCTGGATCTCGGATGTGGCTGTGGTGCATCTGCTATTGCTGCTAAACTCAGTGGGGCTGCTCATGTTGTGGCCAATGACATTGATCCAATTGCTGCTATTGCCACAAAGATGAACTGTGAGCTGAATGGATTAGAGCCCTTGCCTTGTGTGACTGACAATCTGATCGGTTCAGAACCTGAGAACTGGGACCTCATCCTGCTGGGAGACATGTTCTATGATGAGACTCTTACAGACAGCTTACATAAGTGGCTCTACAAATGTGTTAAGCTTCACAGAACACAGATCCTTATTGGAGACCCAGGACGGGCTCAGTTTGAGAGCCATGACGTCAAGGCACTGTTGTATGAACGGGCTCGGTTTGAGTTACCTGACTCGGTTCGAGAGGAAAATTATGGACTGACAAGTAGCACAGTGTGGTGCTACAGACCTGATTACTAAGGTACTTTTTCAACAAGAAAATCTGTGTATCTGTTAACAATAAGCAGTTCTATGCTTTAAGAAtactttaaaaaacataactgACACTTCACACTCATTTTAATAAGatgtacattatttataggACTTGGCAGGTTACTGTGAGAAAGCACTGGTTGTAGGATTTTCACCCATATGTAatatgaaagctttttttttttcctgtaagaaCGCTCGAGTATTTCTGAATGTTTCCAAAATTTCAAATATGCAAAATCTGTCCACTTCAGAGTTCATTCAAGAAACTGTTCAAGTTAGAACCATTCAATCAAAAAGAGATTACACtcatggaaaataatcatcctTTAGGCAGGAGAAGATGCAAGAATCTCCCTCACATCACCTCTCTCCTGATctcttccctttctttctttc
>XM_034307371.1
TAGCGACTCACTGAGCTGTTTATCGATATGAACCGAggactgtttatttatttacgtgGCAAAGACACGTTGAGAAAAACCCTTCAGACTGTTCGACAAAGAAGCATTCGCCATTATATGAAATACTCTTTACAGTGAAATGTCGCTTCTGGACGGAGAGAGCAGAGTTGTGGCCACTTCCTGATCCCTTCTGGGCTATATACTGGCCTGGGGGACAGGCACTGACCAGGGAAGATACCATGATCAAGAAGCTGGTTCACCCAGGGcgaggctcagccattgcactcCGGTTGTGCTGACCCCtgcgaattccccaaatgtatcTTCTAAACAATCCAGAGCTGTCAGTAGGTAGAAGAGTGCTGGATCTCGGATGTGGCTGTGGTGCATCTGCTATTGCTGCTAAACTCAGTGGGGCTGCTCATGTTGTGGCCAATGACATTGATCCAATTGCTGCTATTGCCACAAAGATGAACTGTGAGCTGAATGGATTAGAGCCCTTGCCTTGTGTGACTGACAATCTGATCGGTTCAGAACCTGAGAACTGGGACCTCATCCTGCTGGGAGACATGTTCTATGATGAGACTCTTACAGACAGCTTACATAAGTGGCTCTACAAATGTGTTAAGCTTCACAGAACACAGATCCTTATTGGAGACCCAGGACGGGCTCAGTTTGAGAGCCATGACGTCAAGGCACTGTTGTATGAACGGGCTCGGTTTGAGTTACCTGACTCGGTTCGAGAGGAAAATTATGGACTGACAAGTAGCACAGTGTGGTGCTACAGACCTGATTACTAAGGTACTTTTTCAACAAGAAAATCTGTGTATCTGTTAACAATAAGCAGTTCTATGCTTTAAGAAtactttaaaaaacataactgACACTTCACACTCATTTTAATAAGatgtacattatttataggACTTGGCAGGTTACTGTGAGAAAGCACTGGTTGTAGGATTTTCACCCATATGTAatatgaaagctttttttttttcctgtaagaaCGCTCGAGTATTTCTGAATGTTTCCAAAATTTCAAATATGCAAAATCTGTCCACTTCAGAGTTCATTCAAGAAACTGTTCAAGTTAGAACCATTCAATCAAAAAGAGATTACACtcatggaaaataatcatcctTTAGGCAGGAGAAGATGCAAGAATCTCCCTCACATCACCTCTCTCCTGATctcttccctttctttctttc

Function

symbol description
etfbkmt Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in negative regulation of electron transfer activity; negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase; and peptidyl-lysine trimethylation. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial matrix. Orthologous to human ETFBKMT (electron transfer flavoprotein subunit beta lysine methyltransferase).

NR:

description
electron transfer flavoprotein beta subunit lysine methyltransferase isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K22843 ETFBKMT, METTL20; ETFB lysine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU178677 False 283 lncRNA 0.46 2 18304909 18305279
XM_026920049.2 True 1305 mRNA 0.42 3 18303142 18305329
XM_026920050.2 False 1097 mRNA 0.43 4 18303142 18305031
XM_034307371.1 False 1214 mRNA 0.43 5 18303142 18305236

Neighbor

gene id symbol gene type direction distance location
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 57438 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 84401 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 100517 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 138332 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 381621 17914613 ~ 17921521 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 13295 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 35124 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 73400 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 99183 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 142813 18448142 ~ 18457983 (-)
G150854 NA non-coding downstream 183 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 47724 18255075 ~ 18255418 (-)
G150776 NA non-coding downstream 190665 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 390287 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 543443 17759421 ~ 17759699 (-)
G150875 NA non-coding upstream 880 18306209 ~ 18306443 (-)
G150891 NA non-coding upstream 33173 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 67784 18373113 ~ 18376841 (-)
G150988 NA non-coding upstream 116164 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 117328 18422657 ~ 18423325 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 88655 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1244236 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 2074808 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 2311048 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2583567 15711993 ~ 15719575 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 48645 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 119990 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 986880 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 1074327 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 1081912 19387241 ~ 19387366 (-)

Expression


Co-expression Network