G150875


Basic Information

Item Value
gene id G150875
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18306209 ~ 18306443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178697
ATTTAGTTCAGTTTAACAAAGTTCTTAACAAAGTtctatttttgcagtgtgttccTTCTTCATGGTTCTCAAGGAATGAATGATAGGAGAGTTTGAGTAAAGCAGCTGATGCACAGATAATATTGTAAAACTAACTTATCCAACATGACTGGTATACATCAAACAGATTATGCACACATGCCAAAAGCAGCACATATGTCCCAGgctggcttagtggttagcactgttgccttgc

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0051216 cartilage development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU178697 True 235 lncRNA 0.38 1 18306209 18306443

Neighbor

gene id symbol gene type direction distance location
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 60505 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 87468 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 103584 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 141399 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 384688 17914613 ~ 17921521 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 12181 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 34010 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 72286 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 98069 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 141699 18448142 ~ 18457983 (-)
G150854 NA non-coding downstream 3250 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 50791 18255075 ~ 18255418 (-)
G150776 NA non-coding downstream 193732 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 393354 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 546510 17759421 ~ 17759699 (-)
G150891 NA non-coding upstream 32059 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 66670 18373113 ~ 18376841 (-)
G150988 NA non-coding upstream 115050 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 116214 18422657 ~ 18423325 (-)
G150996 NA non-coding upstream 138448 18444891 ~ 18445188 (-)
etfbkmt etfbkmt other downstream 880 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 1408 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 91722 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1247303 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 2077875 16141119 ~ 16228334 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 47531 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 118876 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 985766 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 1073213 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 1080798 19387241 ~ 19387366 (-)

Expression


Co-expression Network