G150933



Basic Information


Item Value
gene id G150933
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18423558 ~ 18424220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU178777
TGCTTTACATCCATTAAAAAGTTCCACCCagtgttttcttaaaaaaaaaaaaaaaaaaaacagtcttctgctgttgtagcccatccacctcaagctttgatgtgttgtgtgttgctgCTCACCCCGGTTGTAAgaatgcttatttgagttactatagacttcctgtcagctcaaaccagtctggtcattctcctctgtgtttcagtctgcagaccctccacaaaCTGGATGTtttccgcaccattctgtgtaaactctagagtctgttgtgtgtgaaaatcccaggagatcagcagtttctgaaatactcaaaccagcccatctggcatcaacatccatgccacagttaaagtcacagagatcacactttttctacattctgatgtttgatgtgaacaataactgaagctcttgacctgtatctgcatgattttatgcatggtgctgttgccacatgattggctgaatggataCCTGTATACATGAGCaggtgtactggtgttcctaataaagtgtacactgagtgtatgtatgcatgGTGTATGCAGTGGACTAGCaccccattcagggtgtatttacacattgcacccagtgttcccgggataagctCTAAATCCACCAagaccctaaccaggataaatcagttattgaagatggatgaat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU178777 True 663 lncRNA 0.42 1 18423558 18424220

Neighbor


gene id symbol gene type direction distance location
pkmb pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699 coding upstream 48194 18368046 ~ 18375364 (+)
LOC113529962 LOC108275334 coding upstream 105833 18306241 ~ 18317725 (+)
amn1 amn1 coding upstream 120633 18297594 ~ 18302925 (+)
si:ch211-106e7.2 NA coding upstream 126856 18276911 ~ 18296702 (+)
slc41a2a NA coding upstream 168788 18245570 ~ 18254770 (+)
pim3 pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827 coding downstream 63264 18487484 ~ 18490931 (+)
brd1b LOC108436948,LOC108275266,LOC107661448 coding downstream 67525 18491745 ~ 18503991 (+)
prr5l prr5l,LOC107573861 coding downstream 144393 18568613 ~ 18577366 (+)
api5 api5,LOC107696269,LOC107753602 coding downstream 154891 18579111 ~ 18586692 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding downstream 197968 18622188 ~ 18634768 (+)
G150900 NA non-coding upstream 56450 18366882 ~ 18367108 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding upstream 77829 18342243 ~ 18345729 (+)
LOC117598020 NA non-coding upstream 284413 18130846 ~ 18139145 (+)
G150609 NA non-coding upstream 508316 17914625 ~ 17915242 (+)
G150592 NA non-coding upstream 510975 17911637 ~ 17912583 (+)
G150932 LOC108436944 non-coding downstream 1097 18425317 ~ 18444052 (+)
G150952 NA non-coding downstream 105919 18530139 ~ 18530708 (+)
G150954 NA non-coding downstream 113041 18537261 ~ 18537855 (+)
G150958 NA non-coding downstream 127673 18551893 ~ 18552137 (+)
LOC113530068 NA non-coding downstream 177319 18601539 ~ 18620821 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 239525 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 581023 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2600967 15807990 ~ 15822591 (+)
svip svip other upstream 2698467 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2770874 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 250790 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 297375 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 323607 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 696931 19121151 ~ 19125201 (+)
G151401 NA other downstream 836404 19260624 ~ 19263893 (+)

Expression



Co-expression Network