G150958


Basic Information

Item Value
gene id G150958
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18551893 ~ 18552137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178803
TTAAGGCCTTCCATTTAGTACGAATGTAATTTCCACACTGCAGATGTTATGGTTATTGTGTTATTGAGGGTGTCAGGGTGTCAATTTAAAATAGGAGGCAAGCAATGCACATAGATTTAATGAAACTGTTTAGAATTATCTTCACTAacctaaacactgttaatgaaagATCTACAGCAGCGCTGTTGTTTCTCCATTATCTCCATCCTGTTTCTGTCAGGATTGTTACAGCAGGtgcagtgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178803 True 245 lncRNA 0.38 1 18551893 18552137

Neighbor

gene id symbol gene type direction distance location
brd1b LOC108436948,LOC108275266,LOC107661448 coding upstream 47902 18491745 ~ 18503991 (+)
pim3 pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827 coding upstream 60962 18487484 ~ 18490931 (+)
pkmb pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699 coding upstream 176529 18368046 ~ 18375364 (+)
LOC113529962 LOC108275334 coding upstream 234168 18306241 ~ 18317725 (+)
amn1 amn1 coding upstream 248968 18297594 ~ 18302925 (+)
prr5l prr5l,LOC107573861 coding downstream 16476 18568613 ~ 18577366 (+)
api5 api5,LOC107696269,LOC107753602 coding downstream 26974 18579111 ~ 18586692 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding downstream 70051 18622188 ~ 18634768 (+)
alkbh3 alkbh3 coding downstream 84552 18636689 ~ 18645706 (+)
c9h11orf96 c14h11orf96,cunh11orf96,clg19h11orf96,si:ch1073-281m9.1,LOC103025886,LOC107580776,LOC107661503,LOC107696240,LOC107575890 coding downstream 100634 18652771 ~ 18654175 (+)
G150954 NA non-coding upstream 14038 18537261 ~ 18537855 (+)
G150952 NA non-coding upstream 21185 18530139 ~ 18530708 (+)
G150932 LOC108436944 non-coding upstream 107841 18425317 ~ 18444052 (+)
G150933 NA non-coding upstream 127673 18423558 ~ 18424220 (+)
G150900 NA non-coding upstream 184785 18366882 ~ 18367108 (+)
LOC113530068 NA non-coding downstream 49402 18601539 ~ 18620821 (+)
G151093 NA non-coding downstream 393138 18945275 ~ 18945942 (+)
G151084 NA non-coding downstream 402912 18955049 ~ 18997932 (+)
G151134 NA non-coding downstream 557706 19109843 ~ 19110973 (+)
G151395 NA non-coding downstream 674512 19226649 ~ 19227893 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 367860 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 709358 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2729302 15807990 ~ 15822591 (+)
svip svip other upstream 2826802 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2899209 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 122873 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 169458 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 195690 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 569014 19121151 ~ 19125201 (+)
G151401 NA other downstream 708487 19260624 ~ 19263893 (+)

Expression


Co-expression Network