G150988


Basic Information

Item Value
gene id G150988
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18421493 ~ 18422644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178837
GCAAGTTGTACCCCATAACTTAGCCATGAACCAGACGGTATaacaaaaatgttgaaataatgagaaaatatcttgaatcAGCAACAAAATGTCTTGTAATAACAAGCTATAAAGTGGAAATAATGGTATAATATCTTGAAAATAACGAGTTTTGCAGCACCACACAGAGCATTCGTTCTGACTGGCTGCATGACTGTGCTCCGGCACCTGCTAAGCTCCTCACAGAGTGACGAACAGCAGAGCTCCTCACAGCAGAGCTCCTCAGTGGAAATAAACCCCCAACCTCACGGGACATCTAGCAAACCCGCCGTCTGAGGAAGGCCTGCAGTAGCACTAAGCACTGCACTCACCCTGCTCATTATCTGTTTGCGACACTGCTGTCTGGCAGACGCTTCCGTTGCATCTAATCAGCCAACCAAACTGCAGAGCAGCTTTTAtctccaagccatcagactacTTAACAGCCATGAACATCCTTCATCTAGCACTGAGACACTTTACTACCGCCACTTCCGGTCACTTAGATTTACTATTCAGATTTATTATGTACTATTTATTATGACACATTTCATTATACCATTGTAATCATGTAATAGCCCATGACTTTACTATGCCATTGAGATCATTTAATATAGCATATGTCACTTTACCATTGTAATCATGTAATGGCACGTGACTTTACTCTGCCattgaaatcatttaataacacgtcactttactctgccattgAAATCAtgtaatagcacatgtcactttaccattgaaataatataataacatgtcactttactctgccattgAGACCATTTAATATAGCATatgtcactttactctgccactgagaTCATTTTAATAGCACGTCACTTTACCATTGAGATCATTTAACAGCACGTGTCACTTTACTCTATAATTGAAATAATTTAACACATCACCTTACTTTACCACTGAGATCATTTAATAGTGAACGTCACTTTACCATTGAAATCATTTAACAGCAcatcactttactctgccattgTACACCACTGTTTCATTTAACTCATTTACCTTATTTCATTCCTGCATCATCTCAACCACTCATGTCCAAAtatgtgtttgttcatgtctaataagtgttttttttactgtcagtGTTTAAATCTGAGCTTCgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178837 True 1152 lncRNA 0.38 1 18421493 18422644

Neighbor

gene id symbol gene type direction distance location
nptna LOC108274497,LOC108436943 coding downstream 1122 18404512 ~ 18420371 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding downstream 23235 18378729 ~ 18398258 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 73846 18340453 ~ 18347647 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 83070 18318624 ~ 18338423 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 175789 18228113 ~ 18245704 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 25498 18448142 ~ 18457983 (-)
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding upstream 112301 18534945 ~ 18552473 (-)
zcrb1 zcrb1 coding upstream 235891 18658535 ~ 18659614 (-)
LOC113529455 LOC108274993 coding upstream 285417 18708061 ~ 18713197 (-)
LOC117597890 NA coding upstream 303655 18726299 ~ 18729600 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding downstream 44652 18373113 ~ 18376841 (-)
G150891 NA non-coding downstream 82779 18338502 ~ 18338714 (-)
G150875 NA non-coding downstream 115050 18306209 ~ 18306443 (-)
G150854 NA non-coding downstream 118534 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 166075 18255075 ~ 18255418 (-)
G150989 NA non-coding upstream 13 18422657 ~ 18423325 (-)
G150996 NA non-coding upstream 22247 18444891 ~ 18445188 (-)
G151009 NA non-coding upstream 85132 18507776 ~ 18507976 (-)
G151026 NA non-coding upstream 163737 18586381 ~ 18587613 (-)
LOC117598005 NA non-coding upstream 212449 18635093 ~ 18637152 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 57457 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 116164 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 116692 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 207006 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1362587 17053353 ~ 17058906 (-)
G150991 LOC108436944 other upstream 2675 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 869565 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 957012 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 964597 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 965125 19387769 ~ 19387895 (-)

Expression


Co-expression Network